Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h18
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 31 0.22
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 31 0.22
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 30 0.29
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 29 0.89
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.89
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|... 28 1.2
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 28 1.2
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 27 2.1
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 27 2.7
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 26 6.3
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.3
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 6.3
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 6.3
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 8.3
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 267 IEKRIEDSLRENWRDNWNWTVKDGASILQ 353
I +RI L E W+D W W D AS L+
Sbjct: 386 IAQRILGDLSEEWKDAWRWREDDKASELK 414
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 30.7 bits (66), Expect = 0.22
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 407 SAVPVALRRSPIT----TSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKK 574
++VP L+++P T S+P + ++ + S E TK + ++ + S KK
Sbjct: 149 NSVPRVLKKAPSTHSPQLSVPSKTSTIDKTDTRSTEKTKGKDIFSNARNQKGNSSRKNKK 208
Query: 575 SPAHSHKHE 601
+P +HK +
Sbjct: 209 APLENHKEK 217
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 401 PASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPR 547
P S +P AL R P++ S+P + + +S PES T T +K R
Sbjct: 418 PTSTMPEALPREPLSFSLP-EKAPEKATNISIPESAPTTAGSTCKVKVR 465
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 28.7 bits (61), Expect = 0.89
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 374 IQRFAWQLVPASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRK 550
++ FA+ + P + + + ++NT + + SP TK K ITD LKP K
Sbjct: 48 LENFAYNASTEISSPKISEKKHSSLPIKRKNTFNESSTSFSP-FTKAHKEITDDLKPDK 105
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 464 NTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKSPAHSHKHECG 607
N A+ PE+ K+ +R TD + RKR N +S + K G
Sbjct: 9 NFVVDNAQSRKPEALKSSRRWTDRARDRKRQKRNSNESSKSTVKRNSG 56
>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 174
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -3
Query: 419 PELQTLVLIATRISECPVKVVHLQNRSPIFDCPIPIVSPILSQRIFYSLLYR 264
PE Q V + +S C L +++PI+D + IL ++ YS + R
Sbjct: 7 PETQVHVFVYENVSNCAAIHEQLISQNPIYDYAFLDAATILYKKQVYSAIIR 58
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +2
Query: 356 EQPLPGIQRFAWQLVPASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDF 535
E+P+P + + P+S P + P +S + ++ K S P++T+T R + F
Sbjct: 158 EKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSKPKATET-ARPSSF 216
Query: 536 LKPRKRLSGN 565
+ R+ N
Sbjct: 217 SRNEDRVKMN 226
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/16 (62%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Frame = -2
Query: 588 LCAGD-FFPFPDSLFR 544
+CA D FFPFPD+++R
Sbjct: 528 VCASDAFFPFPDNIYR 543
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 449 SMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKSPAHS 589
S+PK + Q+ SS + ++ IT KP ++ N +PA +
Sbjct: 258 SLPKTSDLEQQRGTSSSQPSENDANITALPKPEPKMYENSDLTPART 304
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 479 PGWMYSVSASRL*SVTFLTLPELQTLVLIATRISECPVKVVHLQNRSPI 333
PGW YSV +S + L + TL L +T +++ LQ R P+
Sbjct: 664 PGWWYSVESSST-AYLLKQLEKSCTLALKSTPEMRHKLRIAALQQRFPV 711
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 92 SWMLIGVVFRCLDSIEMSALSVRAPGLQATTTVLDTR 202
SW+ I +V + + + ALSV APG Q+ D R
Sbjct: 109 SWVQI-MVAKIWTGLSIGALSVLAPGFQSEVAPADLR 144
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 434 SPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKSPAHSHKHECG 607
+P + P + T ++ V++ ES + + P K S +G KSPA E G
Sbjct: 469 TPRFSVRPNKFTGSRAGFVAALESRLQKGPLMRSFVPNKSKSPSGTKSPASGETSEAG 526
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 677 PSSCV*NAAAIDEPLWEDECEPHDHTRAC 591
P+ CV ++ I W +C P D+T C
Sbjct: 41 PTCCVVGSSCIYSNPWYSQCIPVDYTGPC 69
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 470 STQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKSPAHSHKH 598
S++ K +S E T++ T+ K K +S +GK H H H
Sbjct: 634 SSRNRKATSNE-TQSSSNSTETSKLSKNVSESGKDKSPHWHSH 675
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -2
Query: 162 ALTLKADISIESKQRNTTPINIHDVVFTLRYLIIITRKIFDLKTGFI 22
AL L + +++ ++ + HD+ +L +T + FD+KT +I
Sbjct: 8 ALALTWSLLVQAARQTVLAVADHDIGGYSTFLQSLTDRDFDVKTSYI 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,800
Number of Sequences: 5004
Number of extensions: 62457
Number of successful extensions: 239
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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