Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h18
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)                   56   3e-08
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.058
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)                  33   0.31 
SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)              29   5.0  
SB_34523| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.7  
SB_56427| Best HMM Match : Gly_radical (HMM E-Value=6.5)               28   6.7  
SB_50986| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)                28   6.7  
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)                       28   6.7  
SB_52711| Best HMM Match : rve (HMM E-Value=8.3e-05)                   28   8.8  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)
          Length = 228

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 32/100 (32%), Positives = 50/100 (50%)
 Frame = +2

Query: 227 ALDGVRRNLFGCTDREENRRFVERELARQLELDSQRWGFDFANEQPLPGIQRFAWQLVPA 406
           A   VRR LFG  D E+ +  ++RE+ + +E +S+RW FDFA+E P  G  R+AW     
Sbjct: 22  ARTSVRRCLFGPVDHEQTKADLQREIKKVVESESRRWNFDFASETPQVG--RYAWFKRHE 79

Query: 407 SAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRI 526
           S    +   +  TTS+ + N           E   +Q+ +
Sbjct: 80  SEALASNMDTACTTSLEQANRDILIEDTQQNEVQNSQRNV 119


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = +2

Query: 425 LRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKSPAH 586
           LRRS       K N + QEAKVS+       + IT  ++  K  +G G K+PAH
Sbjct: 821 LRRSRSKEKDIKTNPTVQEAKVSAVTGVFVPRTITRTVQGMKIPAGRGLKAPAH 874


>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
          Length = 1417

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = -1

Query: 334 SLTVQFQLSRQFSLNESSILFSIGTAE*IPSDTIESGNSANSKRPSVQHSRRGL*AGRPH 155
           SL +     R FS   S  L ++ T     S T + GN A      + H R+G       
Sbjct: 73  SLGISQSWVRAFSNTHSFFLLALQTKPVTKSTTRKGGNMARVTHRHLNHVRKGKAGNMAR 132

Query: 154 TQSRHLNRVQTAK 116
              RHLN V+  +
Sbjct: 133 VTHRHLNHVRKGR 145


>SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +2

Query: 434 SPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKSPAHSHKHECGHG 613
           +P+  S  K N + ++ KV   +S+ T +     + P+K+L+   KK     +K E  HG
Sbjct: 222 APMKKSAVKPN-ARRKPKVVKVKSSSTSEEEKSPVAPKKKLTKTTKKREVEENKQEENHG 280

Query: 614 AHIRPPKVARLSQP 655
                P +     P
Sbjct: 281 VVTHAPMIGFPKMP 294


>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1652

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +2

Query: 305  ARQLELDSQRWGFDFANEQP-LPGIQRFAWQLVPASAVPVALRRSPITTSMPKQNTSTQE 481
            + Q+  D  +   D  N+   + G+Q  A+ +V A  +  +L+ S      P+QN +   
Sbjct: 908  SEQVASDQNKSNADMGNKHANIKGLQD-AYTVVSAGGITTSLK-SKTAKHSPRQNITATS 965

Query: 482  AKVSSPESTKTQKRITDFL-KPRKRLSGNGKKSPA 583
             K S+P+   T  R++     P+  ++    KS A
Sbjct: 966  LKSSAPKIAATFSRLSTVKPSPKPNIAATSLKSSA 1000


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +2

Query: 407 SAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFL---KPRKRLSGNGKKS 577
           S+  + + +SP   SM KQ       K   P+ST T+ R++  L   +P+   S +   S
Sbjct: 327 SSGSITISKSPADKSMGKQRQEQNGKKHMIPQSTSTESRVSISLSGSQPQSSTSSSSSNS 386

Query: 578 PAHSHKHECGHGAHI 622
            + S        A I
Sbjct: 387 QSSSSSSSASTSATI 401


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 449 SMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGK----KSPAHSHKHECGHGA 616
           S PKQ TST+   ++S  S+++ +      KP +R S   K    +SP    K E    A
Sbjct: 374 STPKQRTSTEIPVITSAPSSQSAE------KPERRTSSESKETRPRSPVEKVKEEEPAKA 427

Query: 617 HIRPPK 634
             RPP+
Sbjct: 428 SFRPPE 433


>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 29  PVFKSKIFRVIIIKYLKVKTTSWMLIGVVFRCLDSIEMSALSVRA 163
           P + +++    IIK LK    +WM++  +F C  SI +  +  +A
Sbjct: 454 PYYLTQLSVEAIIKQLKSSRKTWMVLSAIFACGGSILLLVVLYKA 498


>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
          Length = 849

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 471 PPRRLKFQVQRAPRP 515
           PP+ +KF VQR PRP
Sbjct: 322 PPKMMKFSVQRGPRP 336


>SB_34523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
 Frame = +2

Query: 434 SPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKSPAH--SHKHECG 607
           +PIT S         E +  +    KT+++    LKP K+      + P H  + + + G
Sbjct: 51  TPITGSHQALTAMQSEEEPGASMGHKTERKKAKELKPMKKAGLTPLRPPPHLNTMEDDDG 110

Query: 608 HGAHIRPPKVARLSQPHFK---RTS*AFLHRLPHCRP 709
           H A +   K AR+     +     S  FL  LP   P
Sbjct: 111 HKARMNKLKRARIRLAKNRVNPEVSKPFLKSLPDATP 147


>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -2

Query: 561 PDSLFRGFKKSVILFWVLVLSGLETLASWVDVFCFGIEVVIGDLLNATGTADAGTNCHAN 382
           PD L    ++  +  + L+ + +   AS + + CF I  V  D  +     D G  C  N
Sbjct: 9   PDMLLNAKRRPTVFQFFLLETNMPRKASLILLVCFAIPAVFADYCSVYEKCDDGRICCNN 68


>SB_56427| Best HMM Match : Gly_radical (HMM E-Value=6.5)
          Length = 133

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = +2

Query: 410 AVPV----ALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKS 577
           AVPV    A   +PIT S         E +  +    KT+++    LKP K+      + 
Sbjct: 39  AVPVEGKGASATTPITGSHQALTAMQSEEEPGASMGHKTERKKAKELKPMKKAGLTPLRP 98

Query: 578 PAH--SHKHECGHGAHIRPPKVARL 646
           P H  + + + GH A +   K AR+
Sbjct: 99  PPHLNTMEDDDGHKARMNKLKRARI 123


>SB_50986| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)
          Length = 354

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 395 LVPASAVPVALR---RSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSG 562
           +V  S VP+      ++ I   + K+  S +   VS+PE  K    I DF+KP + + G
Sbjct: 29  VVDKSTVPIGTADKVKATIQEELNKRKMSIKFDVVSNPEFLKEGDAINDFMKPDRVVIG 87


>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
          Length = 232

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -2

Query: 561 PDSLFRGFKKSVILFWVLVLSGLETLASWVDVFCFGIEVVIGDLLNATGTADAGTNCHAN 382
           PD L    ++  +  + L+ + +   AS + + CF I  V  D  +     D G  C  N
Sbjct: 9   PDMLLNAKRRPTVFQFFLLETNMPRKASLILLVCFAIPAVFADYCSVYEKCDDGRICCNN 68


>SB_52711| Best HMM Match : rve (HMM E-Value=8.3e-05)
          Length = 1086

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 34/119 (28%), Positives = 49/119 (41%)
 Frame = +2

Query: 275 ENRRFVERELARQLELDSQRWGFDFANEQPLPGIQRFAWQLVPASAVPVALRRSPITTSM 454
           +NRR  ER    +  L      F   NEQPLPG+      L+P    P + R  P T   
Sbjct: 158 DNRR--ERHKTHENLLADLTAEFRATNEQPLPGLP----VLLPRGVKPSSPRGQPQTKFS 211

Query: 455 PKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKSPAHSHKHECGHGAHIRPP 631
           P +  + ++A    P  T  +    DFL  R +   +G +S    ++  CG      PP
Sbjct: 212 PWR--APEQAPPPPPPWTAPE---PDFLIDRAKARYHGGES---QNQIPCGQRKSQIPP 262


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 510  RPKRE*QIS*SPGKGYRGTGRSPPRTATST 599
            RP  +  I  +PG+G+RG G  PP   TST
Sbjct: 1389 RPTSDTSIDHTPGRGHRG-GIPPPLVITST 1417


>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/81 (25%), Positives = 35/81 (43%)
 Frame = +2

Query: 38  KSKIFRVIIIKYLKVKTTSWMLIGVVFRCLDSIEMSALSVRAPGLQATTTVLDTRSLRVR 217
           K +IFR + +K++   +T    + V F+CL    +   S R   L   T++    S+R+ 
Sbjct: 59  KKRIFRALPLKFVHTSSTRPSNLSVCFKCLSVFLILPFSAR---LSVHTSMFVRLSVRLS 115

Query: 218 GVTALDGVRRNLFGCTDREEN 280
            +     V      CT R  N
Sbjct: 116 ALFVKHRVTHLDHECTRRGIN 136


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +2

Query: 389 WQLVPASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNG 568
           W   P   V + +R  PI  + PK NTS   A  SS        R     +  KRLS + 
Sbjct: 121 WLAPPKETVTLEIR--PIYNNRPKNNTSISPAFTSSGGDRSRVGRADGKCQTDKRLSLSE 178

Query: 569 KKSP 580
           +  P
Sbjct: 179 ESKP 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,099,050
Number of Sequences: 59808
Number of extensions: 514420
Number of successful extensions: 1876
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)