Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h18
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50796-3|CAA90667.1| 184|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AF179358-1|AAF13868.1| 184|Caenorhabditis elegans cyclin-depend... 54 1e-07
Z50796-4|CAA90670.1| 258|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical pr... 31 0.83
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 30 1.5
Z77664-1|CAB01216.2| 900|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 29 4.4
Z68337-5|CAA92743.1| 230|Caenorhabditis elegans Hypothetical pr... 28 5.9
U58743-1|AAB00613.1| 298|Caenorhabditis elegans Hypothetical pr... 28 5.9
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 7.8
>Z50796-3|CAA90667.1| 184|Caenorhabditis elegans Hypothetical
protein T05A6.1 protein.
Length = 184
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Frame = +2
Query: 230 LDGVRRNLFGCTDREENRR---FVERELARQLELDSQRWGFDFANEQPLPGIQRFAWQLV 400
+ RR LFG E+ R ++E + R + +SQ+WGFDF E PLP F ++++
Sbjct: 1 MSSARRCLFGRPTPEQRSRTRIWLEDAVKRMRQEESQKWGFDFELETPLPSSAGFVYEVI 60
Query: 401 PASAVPVALRRSPI---TTSMPKQNTSTQEAKVSSPESTKTQK 520
P + VP R + TT +ST +SSP ++ ++
Sbjct: 61 PENCVPEFYRTKVLTVRTTCSSLDISSTTLTPLSSPSTSDKEE 103
>AF179358-1|AAF13868.1| 184|Caenorhabditis elegans cyclin-dependent
kinase inhibitor protein.
Length = 184
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Frame = +2
Query: 230 LDGVRRNLFGCTDREENRR---FVERELARQLELDSQRWGFDFANEQPLPGIQRFAWQLV 400
+ RR LFG E+ R ++E + R + +SQ+WGFDF E PLP F ++++
Sbjct: 1 MSSARRCLFGRPTPEQRSRTRIWLEDAVKRMRQEESQKWGFDFELETPLPSSAGFVYEVI 60
Query: 401 PASAVPVALRRSPI---TTSMPKQNTSTQEAKVSSPESTKTQK 520
P + VP R + TT +ST +SSP ++ ++
Sbjct: 61 PENCVPEFYRTKVLTVRTTCSSLDISSTTLTPLSSPSTSDKEE 103
>Z50796-4|CAA90670.1| 258|Caenorhabditis elegans Hypothetical
protein T05A6.2a protein.
Length = 258
Score = 37.9 bits (84), Expect = 0.007
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Frame = +2
Query: 224 TALDGVR---RNLFGCTDREENRRFVERELARQLELDSQRWGFDFANEQPLPGIQ-RFAW 391
TA DG R R LFG D EE R + L + DS+++ FDF+ P+ G + + +
Sbjct: 5 TAGDGKRKAARCLFGKPDPEEVSRQLNSSLEEMYKKDSRKFNFDFSGGVPIVGSRGDYEF 64
Query: 392 QLVPASAVP-------------VALRRS-PI--TTSMPKQNTSTQEAKVSSPESTKTQKR 523
+ + AS VP +A R S P+ T MP ++ E+ + T
Sbjct: 65 ESISASEVPSFYREKIVRPRKIIARRNSTPVSDTVEMPSESPPVVESNETPLLIASTSTE 124
Query: 524 ITDFLKPRKRLS 559
+T + KP R S
Sbjct: 125 VTVYEKPVTRSS 136
>Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical
protein C43C3.3 protein.
Length = 446
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 343 RFCK*TTFTGHSEIRVAISTSVCSSGSVKKVTDHNLDAE 459
RF +T H +++V + CS KKV+D NL AE
Sbjct: 262 RFGNQSTVFVHCQVQVCLKKDECSKTCYKKVSDSNLTAE 300
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 401 PASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRI 526
P ++ ALR S +T +Q+TST +A SS S + KR+
Sbjct: 823 PKASSSTALRPSTSSTPSQQQSTSTAKAMTSSSTSAEDAKRL 864
>Z77664-1|CAB01216.2| 900|Caenorhabditis elegans Hypothetical
protein F53H10.2 protein.
Length = 900
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 545 RKRLSGNGKKSPAHSHKHECGHGAHIR 625
R + + NG +P + KH GHG I+
Sbjct: 184 RNQAASNGNHNPMYMRKHSAGHGIEIK 210
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +2
Query: 266 DREENRRFVERELARQLELD-SQRWGFDFANEQPLPGIQRFAWQLVPASAVPVALRRSPI 442
++EE R ++ ++E + +QR+G F + PL +R +L+PA R
Sbjct: 31 EKEEEREACKKRYLERIEREEAQRFGKQFKID-PLTFAERLERKLIPAEKKQ---RYREF 86
Query: 443 TTSMPKQNTSTQEAKVSSPESTKTQKRITDFL 538
+ T V + ES KT+ ++ DFL
Sbjct: 87 IPCVVDHFGGTDVHFVKAMESIKTENQLLDFL 118
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 401 PASA-VPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGNGKKS 577
P+SA +P ++ +TS P+Q + ++++ SSP++ + + + ++ ++ + +
Sbjct: 367 PSSAYLPHETDQNQSSTSFPQQESDNEDSETSSPDTPENGSVLVNMIQDYVQMVMSVSRE 426
Query: 578 PAHSHKHE 601
SH+ E
Sbjct: 427 FQQSHREE 434
>Z68337-5|CAA92743.1| 230|Caenorhabditis elegans Hypothetical
protein M7.8 protein.
Length = 230
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 252 KFLLTPSRAVTPRTRSDLVSSTVVVACRPGAL--TLKADISIESKQRNTTPI 103
KFLL R P R+ +S + C GAL LK + SI ++ ++T I
Sbjct: 27 KFLLESFRVDEPLNRASKISCEEIEKCLDGALDRALKTESSILARSQDTHEI 78
>U58743-1|AAB00613.1| 298|Caenorhabditis elegans Hypothetical
protein F39F10.3 protein.
Length = 298
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 494 SPESTKTQKRITDFLKPRKRLSGNGKKSPAHSHKHECGHGAHIRPPKVARLSQPHFK 664
S S Q + DF R+ NG ++P + C G HI PP A L PH +
Sbjct: 142 SHSSNMFQLVLVDFGCARRFKDVNGNRTPPAPYPSNCIKGLHI-PPHSA-LGMPHME 196
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 401 PASAVPVALRRSPITTSMPKQNTSTQEAKV-SSPESTKTQKRITDFLKPRKRLSGNGKKS 577
P + P+A R+P+ S P + + + ++P +T T++ T +P R + K +
Sbjct: 321 PLATTPLATTRAPLPPSPPPRTSKRPVTQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTT 380
Query: 578 PA 583
A
Sbjct: 381 TA 382
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,817
Number of Sequences: 27780
Number of extensions: 369099
Number of successful extensions: 1314
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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