Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h17
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 32 0.071
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 27 2.0
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.7
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 3.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.7
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 4.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.2
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 26 6.2
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 6.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.2
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 8.2
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 32.3 bits (70), Expect = 0.071
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 233 LGMMKQFVKALDKNNASFEYLCKKIPRLSDAKINGVFDGPQIRSLMA 373
L + +VKAL++ +A++E L K L D+ ++ +FDG S+ A
Sbjct: 211 LSLDSSYVKALNRRSAAYEQLGKLDEALMDSTVSCIFDGFANESMTA 257
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 146 KNLKVETKNVKQKKIISPEKFLLPPLHIKLGMMKQFVKALDKNNASFE 289
K ++V +N K ++ E+ + L I+LG++ VK D N+SFE
Sbjct: 631 KEMEVLCENNDLSKQLTSEEIVHMKLLIQLGLLSVKVKNGDYENSSFE 678
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 482 NKVANLLDKYQKLGCNMSIKLHFLDSHVDFF 574
N+V N L Q + + ++HFL++H+ F
Sbjct: 80 NRVCNALALLQCIASHPETRIHFLNAHITLF 110
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 413 DAWLAFRDVVNNFLGNNKHPDYKNK 487
D+W F D NN HPDY+NK
Sbjct: 524 DSW--FNDTENNGHAQWVHPDYRNK 546
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 4.7
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +2
Query: 119 YVQK*WNPRKNLKVETKNVKQKKIISPEKFLLPPLHIKLGMMKQF-VKALDKNNASFEYL 295
+VQK W R+ ++ K+V+++ S +K L + +L M + + L+KN L
Sbjct: 1599 FVQKEWEKRR--EILQKDVEEQVAQSHQK-QLDNIRKELEMRNKLKLSMLEKN------L 1649
Query: 296 CKKIPRLSDAKINGVFDGPQIRSLMADENFDATMNNTESDA 418
+ L +K D P I SL A +N D+ +N+E A
Sbjct: 1650 ARVRAELEQSKKK---DSPAILSLEASKNTDSNKSNSEVPA 1687
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 446 NFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNL 586
+++ + KHP+YKN ++KY K G K+ D F +N+
Sbjct: 78 HYVSSPKHPNYKN-----IEKYLKPGWLFGQKVDSADFQYSAFRENM 119
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 477 IKIRLQTYWISI---KNWGVI*A*NSTF*IHMWTFFLIILVITV 599
I + LQ YW+S ++W + + ++ +H W FL++++ V
Sbjct: 2190 ISVFLQNYWMSSVYGRSWAFMWSAHN---VHKWAMFLLVILFYV 2230
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +2
Query: 458 NNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNLGDYSKEQEERFYQDIKT 637
N+K P KN+ A ++D L S L+ S + ++ Y E +E + T
Sbjct: 48 NSKSPSLKNETAFVVDSVSTLSAESSALLYNTQSSL-LTGLSMNGYLGEYQEDIIHHLIT 106
Query: 638 METRYQCRWNV-NMMADYCWSL 700
E + ++ N + WS+
Sbjct: 107 REKNFLLNVHLSNQQPELRWSM 128
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 398 NNTESDAWLAFRDVVNNFLGNN-KHPDYKNKVANLLDKYQKLGC 526
+N+ + L + VN LG+ H D+KN++ ++ +++L C
Sbjct: 662 SNSVTHRALLLKLCVNKLLGSLLDHNDFKNRLETAIETFRELPC 705
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 6.2
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 2/148 (1%)
Frame = +2
Query: 230 KLGMMKQFVKALDKNNASFEYLCKKIPRLSDAKINGVFDGPQIRSLMADENFDATMNNTE 409
KLG +++ K ++K NAS L +I L A+I G + SL + +++
Sbjct: 1286 KLGKIQELEKEVEKLNASLNPLQTEINELK-AEI-----GAKTASLNLMKEYNSRWK--- 1336
Query: 410 SDAWLAFRDVVNNFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNLG 589
L F+ V+N + P ++ + +K + KL D F +
Sbjct: 1337 ----LRFQSVLNKY--ERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVN 1390
Query: 590 DYSKEQE--ERFYQDIKTMETRYQCRWN 667
++E E ++ + T TR WN
Sbjct: 1391 SLNEEVENLKKEVEQANTKNTRLAAAWN 1418
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 8.2
Identities = 21/107 (19%), Positives = 42/107 (39%)
Frame = +2
Query: 263 LDKNNASFEYLCKKIPRLSDAKINGVFDGPQIRSLMADENFDATMNNTESDAWLAFRDVV 442
+ N +F LC+ + + NG++ + +SL + + + + N F
Sbjct: 162 ISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILMNVGKSLETFFTVDK 221
Query: 443 NNFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDN 583
+ FL K P + L D +Q C+ + LD + P++
Sbjct: 222 DQFLLYKKPPSSNGVLKPLKDVFQYGRCSSLLVRSQLDCYDKKIPES 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,545
Number of Sequences: 5004
Number of extensions: 57970
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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