Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h17
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492...    29   4.9  
06_02_0158 + 12410872-12411183,12413512-12413604,12413692-12413877     29   4.9  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    28   8.5  
01_05_0136 + 18478227-18478254,18478514-18479113,18479344-18479684     28   8.5  

>08_02_0128 -
           12848227-12848619,12848699-12848827,12849108-12849279,
           12849336-12849488,12850017-12850271,12850846-12851000,
           12853319-12853456,12853545-12853715,12853878-12854063,
           12854169-12854290,12855617-12855752,12856108-12856203,
           12856294-12856356,12856846-12856993,12857324-12857514,
           12857916-12857989,12858039-12858171,12858299-12858460,
           12861649-12861745,12861866-12861962,12863994-12864141
          Length = 1072

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 482 NKVANLLDKYQK--LGCNMSIKLHFLDSHVDFFPDNLGDY 595
           N +AN  DK +K  L   +S +LH+L     F P+ + +Y
Sbjct: 200 NLIANAADKLEKETLNTELSFRLHYLTIQFFFVPNFMEEY 239


>06_02_0158 + 12410872-12411183,12413512-12413604,12413692-12413877
          Length = 196

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 563 HVNLESGVLCSYYT 522
           H  L+SGVLCSYYT
Sbjct: 106 HKQLKSGVLCSYYT 119


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 218 PLHIKLGMMKQFVKALDKNNASFEYLCKKIPRLSD 322
           P + K GMM++ VKA++K  AS +     IP ++D
Sbjct: 741 PAYQKQGMMRRLVKAVEKVLASLQVENLVIPAVAD 775


>01_05_0136 + 18478227-18478254,18478514-18479113,18479344-18479684
          Length = 322

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +2

Query: 542 LHFLDSHVDFFPDNLGDYSKEQEERFYQDIKTMETRYQCRWNVNMMADYCWSLTN 706
           +H    HV+  PD++ + S + +E   ++I   E  ++   N   +  +CW+ +N
Sbjct: 96  IHEEPLHVESEPDSIAESSSQSQELEEEEIHPSEIPFEFEEN---LFKFCWNTSN 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,962,927
Number of Sequences: 37544
Number of extensions: 301435
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)