Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h17
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)                    29   5.0  
SB_31129| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  28   6.6  
SB_42128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
          Length = 525

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
 Frame = +2

Query: 368 MADENFDATMNNTESDAWLAFRDV---VNNFLGNNKHPDY----KNKVANLLD----KYQ 514
           +A  N+DA ++NTE+DA  +F      +N  +  NKH       K +  +L D    KY 
Sbjct: 218 VAGVNWDALIHNTENDASKSFSKFFKRLNRII--NKHAPVKTISKRRSKDLRDTQNYKYY 275

Query: 515 KLGCNMSIKLHFLDSHVDFFPDNLGDYSKEQE 610
           +   +  I++   + ++D+F +N+ +  K  E
Sbjct: 276 RNKLSTLIRISKKEYYIDYFENNVTNMKKPWE 307


>SB_31129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 386 DATMNNTESDAWLAFRDVVNNFLGNNKHPDYKNKVANLLDK 508
           D TM  T++ A LA     NN LG N    +  ++ NLL+K
Sbjct: 16  DGTMFLTDTGALLACGSNANNKLGLNNRQGFLMQMKNLLNK 56


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 386 DATMNNTESDAWLAFRDVVNNFLGNNKHPDYKNKVANLLDK 508
           D TM  T++ A LA     NN LG N    +  ++ NLL+K
Sbjct: 251 DGTMFLTDTGALLACGSNANNKLGLNNRQGFLMQMKNLLNK 291


>SB_42128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 596 SKEQEERFYQDIKTMETRYQCRWNVNMMADYCWSLTNDIT 715
           SK++EE          TRY+ +W VNM  ++     N IT
Sbjct: 20  SKDEEEVALAQAVPASTRYKKKWCVNMFENWRADRVNKIT 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,181,177
Number of Sequences: 59808
Number of extensions: 379955
Number of successful extensions: 978
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)