Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h17
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    29   2.5  
CU457740-2|CAM36332.1|  301|Caenorhabditis elegans Hypothetical ...    29   4.4  
U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    28   5.8  
U40160-1|AAA81155.3|  531|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -1

Query: 694 PAVISHHIHIPSTLVPXLHSFYVLIKPFFLLFTV 593
           P++++  I + S + P  HS+ ++++PFF+ F V
Sbjct: 261 PSLLTQIITMSSLMNPEYHSYILIMRPFFIDFRV 294


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical protein
            T07F8.1 protein.
          Length = 822

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
 Frame = +2

Query: 347  GPQIRSLMADENFDATMNNTESDAWLA-FRDVVNNF-----LGNN------KHPDYKNKV 490
            G Q+R L+  EN D  +      +W+   R+ +N+        NN         D+   +
Sbjct: 676  GNQVRQLLRTENIDKVLKVFTDCSWIQNMRNFMNDLASLMSASNNAVFTDDDLNDFAKTL 735

Query: 491  ANLLDKYQKLGCNMSI--KLHFLDSHVDFF---PDNLGDYSKEQEERFYQDIKTMETRYQ 655
             NL    + L  +M +  KLH L +H++ +       G  S++  E F+   +T ETR+ 
Sbjct: 736  KNLKRNIRILHPSMGVTPKLHILCTHLEPYIRAKRTWGRTSEQGMEAFHVLFRTTETRFS 795

Query: 656  CRWNVNMMAD 685
               ++ + A+
Sbjct: 796  SVMSLKLRAE 805


>CU457740-2|CAM36332.1|  301|Caenorhabditis elegans Hypothetical
           protein C50E10.2 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 218 PLHIKLGMMKQFVKALDKNNASFEYLCKKIPRLSDAKINGV 340
           P  + + + +Q  + L KN+   EY+C  +    DAK   V
Sbjct: 188 PYILTISLKRQLFEELKKNHGDLEYVCNMLIVAEDAKFPNV 228


>U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical
           protein T10E9.1 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 691 AVISHHIHIPSTLVPXLHSFYVLIKPFFLLF 599
           AV S  + IPS  +  LHS  VL+K  F LF
Sbjct: 41  AVSSTKLFIPSVYIKDLHSVGVLVKLTFKLF 71


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 24/83 (28%), Positives = 35/83 (42%)
 Frame = -3

Query: 707 HLSXTSSNQPSYSHSIDIGTXSP*FLCPDKTFLPALYCNHQDYQEKSPHVNLESGVLCSY 528
           H   +S +  SYS S    + S        ++ P++  N  DY   SP     S    S 
Sbjct: 226 HARDSSGSHESYSGSSSSSSYSSSDSSSYSSYTPSISSN-SDYTSYSP-----SYYSYSS 279

Query: 527 YTPIFDTYPISLQPYFYSRDVYY 459
           Y+P + +Y  S  P +YS   YY
Sbjct: 280 YSPSYSSYGSSYSPSYYSN--YY 300


>U40160-1|AAA81155.3|  531|Caenorhabditis elegans Hypothetical
           protein C56E10.3 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 257 KALDKNNASFEYLCKKIPRLSDAKINGVFDGPQIRSLMADENFDATMNNTESDAWLAF 430
           K LDK    +E LCKK  +L   K     +  Q+ +  +DE  D +    E +A  +F
Sbjct: 43  KQLDKKCGEYEQLCKKTAKLKAEKSRLDVESTQL-TAQSDE-IDQSFTKVEQNAEASF 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,888,931
Number of Sequences: 27780
Number of extensions: 312386
Number of successful extensions: 1103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)