Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h15
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    29   0.43 
SPBC30D10.04 |swi3||replication fork protection complex subunit ...    29   0.75 
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    28   0.99 
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    28   1.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   1.7  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   1.7  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   3.0  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   3.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.0  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    25   7.0  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   7.0  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   7.0  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   7.0  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.2  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   9.2  

>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRR 439
           +D  ++D A++  E E+   GDE DDD+       D+       A +  RR
Sbjct: 191 DDEEIEDVASDKDEEEKPWSGDEEDDDELVVKDSEDETEGVSTIASQRPRR 241


>SPBC30D10.04 |swi3||replication fork protection complex subunit
           Swi3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/78 (21%), Positives = 29/78 (37%)
 Frame = +2

Query: 407 KGDEAEEDTRRVDPQAKTKRVVRNPRFILNPARLTGPRGIQVIPEHFKDFKFRGKGHXXX 586
           K +E +E    ++    + +  R      +  RL    GI  + +  +  K +GKGH   
Sbjct: 24  KNEEEKEFDLGLEENPDSVKKPRKRLAKFDEERLISENGIPKLRKMMRKVKLKGKGHEAK 83

Query: 587 XXXXXXXXXXHWAYRLYP 640
                      W + LYP
Sbjct: 84  DLKQLLGMYHIWTHELYP 101


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
 Frame = +2

Query: 170 KELSIYNLLQLYTTIVKPTDVYPVNKQXXXXXXXXXXXXEDVFLQDEANEARELERVIDG 349
           K L++  + +LY + +KP D Y   +Q               F ++E    RE  +   G
Sbjct: 456 KGLTLEEVNELYESDIKPWDSYKYVRQIESRRIH--------FSKEEEKREREKSKGYRG 507

Query: 350 DEFDDDQRASSPDSDDNSAKGD---EAEEDTRRVDPQAKTKRVVRNPRFI 490
            E    + A   D+DD+SA  +    A   +R V P+        +P ++
Sbjct: 508 QEERFIENADGADNDDSSASSESFASAGAHSRSVFPRRSNVSEESHPTWV 557


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 296 FLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDE 418
           F++D +N  + L  V D  +  +D+ A  P+ DD S KG++
Sbjct: 588 FMRDASNRQKAL--VQDEMQAFEDELAGVPNEDDTSQKGED 626


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
           +D  + D+ N+  + +  I+ +E+ DD+ +S  +S +     DE EE+
Sbjct: 211 QDDHVYDDTNDGTDDD--INNNEYKDDESSSGSESYERDEDVDEEEEE 256


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 356 FDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRV 469
           FD+++  SS D+ +N+    +   D+R  DP+A  K V
Sbjct: 355 FDNNKPVSS-DNHNNTTTSSQVHPDSRNPDPKAAPKAV 391


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 308 EANEARELERVIDGDEFDDDQRASSPDSDDNSAKG 412
           E NE    E   D D +  D   SSP SDD+SA G
Sbjct: 351 EENEEESKELPEDSDIYGKD---SSPSSDDSSAAG 382


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNS--AKGDEAEEDTRRVDPQAKT 460
           ED +   E++E        + +   +DQ   S   D+N    +  E E++  ++DP+ + 
Sbjct: 365 EDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEEQEQEQEEEQIDPE-EA 423

Query: 461 KRVVRNPRFILNPARLTGPRGIQV 532
           KR+    R     A+++G  G+ V
Sbjct: 424 KRIALRERM----AKMSGGIGMHV 443


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +2

Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGD---EAEED 430
           ++E  EA E+E   D +E + D+     D  D   +GD   E E D
Sbjct: 177 EEEEEEADEMEEEFD-EEGEGDEEEEEEDDGDGDGEGDGDGEGEND 221



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 344 DGDEFDDDQRASSPDSD-DNSAKGDEAEED 430
           D DE ++++ A   + + D   +GDE EE+
Sbjct: 173 DADEEEEEEEADEMEEEFDEEGEGDEEEEE 202


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 323 RELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVRNP 481
           + +ER  + +E  DD+  SS D ++N  +    E + R+     KT+ V ++P
Sbjct: 274 KNIEREEEAEETSDDEPLSSED-EENEDEDITEESNLRKRKVSDKTRVVNKHP 325


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 305 DEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEA-EEDTRRVDPQAKTKRVVRNP 481
           DE     E+   + GDE D D+       ++   + D++ EE    ++ + + KR    P
Sbjct: 723 DELGIDEEIMAELRGDEDDQDENDQVTKVEEEHMEDDDSVEEFDPIIEERQRMKRKANRP 782

Query: 482 RFILNP 499
             I+ P
Sbjct: 783 ANIIPP 788


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 329 LERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTK 463
           LER+ D  +   D +    DS+   A   E + +  +V P+AK K
Sbjct: 60  LERIKDIVQRPTDTQLKGQDSNHKKASLTETKTEKAKVKPKAKKK 104


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 48  FCQLKKSSNLNVCRYRRCINIYFGSDRVQ 134
           F   KK   L +CR  + +N+YFG    Q
Sbjct: 72  FALKKKIPILGICRGCQVLNVYFGGSLYQ 100


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 305 DEANEARELERVIDGDEFDDDQRASSPDSD-DNSAKGDE 418
           DE  E  E +     D+F DD+R+   ++D DN+  G+E
Sbjct: 356 DELEELLEKKLNSFCDDFGDDERSGFDNTDHDNTLVGEE 394


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 350 DEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAK 457
           DE +  Q+ ++  ++ +   G+EAEE+   +    K
Sbjct: 471 DEINSSQKVATQQTEGSDQDGEEAEEEWHGISDDGK 506


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +2

Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVRNPRFILNPARLTGPRG 523
           + DE D+D  ASS D+        E EE  +R   + K K      RF  N ++   PR 
Sbjct: 342 ESDEEDEDPYASSHDASSEEEVLQEEEELQKR---EEKLK-----SRFSANASKTNTPRP 393

Query: 524 IQVIPEHFKDFK 559
           ++  P      K
Sbjct: 394 LERTPSSVSPVK 405


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 314 NEARELERVIDGDEFDDDQRASSPDSDDNSAK 409
           N  R+L +V  GDE ++ Q  +  D DD+ A+
Sbjct: 108 NLKRKLNKV--GDELNEQQSDTDDDDDDSKAR 137


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 359  DDDQRASSPDSDDNSAKG-DEAEEDTRRVDPQAKT 460
            D D +  +   D NS +  DE  ED  +++  AKT
Sbjct: 1279 DSDDKQDTASKDKNSLETIDEKMEDASKIEGDAKT 1313


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 370 LIVVKLVTVDYPLQFPSLISFIL 302
           L+V ++  +DYP ++PSL   +L
Sbjct: 107 LVVSRIARLDYPTEWPSLFHDLL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,625
Number of Sequences: 5004
Number of extensions: 39645
Number of successful extensions: 153
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)