Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h15
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.20 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.82 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.82 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 341 IDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQA 454
           +DG    DDQ   SP SD +S+        + +VDP A
Sbjct: 431 LDGKLPHDDQPPLSPQSDSSSSSRSAESPMSVQVDPMA 468


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 332 ERVIDGDEFDDDQRASSPDSDDNSAKGDEAE 424
           E V + DE DDD      D D  +A G  AE
Sbjct: 384 EAVGEVDEDDDDDGDDDDDDDVEAANGKPAE 414


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 422 EEDTRRVDPQAKTKRVVRNPRFILNPARLTGPRGIQVIPEHFKD 553
           E+D R +   + T      PR+ L+P  ++  +G++ I +H K+
Sbjct: 421 EDDARHIPHASVTDSENTVPRY-LSPDVISALKGVRFIAQHIKN 463


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 326 ELERVIDGDEFDD-DQRASSPDSDDNSAKGDEAEEDTRRVD 445
           E+++ ++  E+DD     S+  +DD   + +E EE+ +++D
Sbjct: 291 EIKKEVEDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLD 331


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 460 CFGLWIYTSSILLGFVSF 407
           C+G+W+Y   + L   S+
Sbjct: 219 CYGIWVYFVPLFLIIYSY 236


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 2   EIYIPPKHMW 31
           E+Y+P +H+W
Sbjct: 94  ELYVPSEHIW 103


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 463 TCCKESKVHTEPRSSDR 513
           TC K+ KVHT   + ++
Sbjct: 214 TCSKQLKVHTRTHTGEK 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 460 CFGLWIYTSSILLGFVSF 407
           C+G+W+Y   + L   S+
Sbjct: 95  CYGIWVYFVPLFLIIYSY 112


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 457 NKTCCKESKVHTEPRSSDRAK 519
           N+T  K SK+ + P+S  R K
Sbjct: 167 NRTSLKTSKIVSYPKSRSRKK 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,113
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)