Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h15
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 38 0.007
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d... 32 0.28
At5g07170.1 68418.m00817 hypothetical protein 31 0.49
At3g50550.1 68416.m05528 expressed protein isoform contains a n... 31 0.49
At3g14670.1 68416.m01856 hypothetical protein 31 0.49
At4g03565.1 68417.m00490 expressed protein 31 0.65
At5g63740.1 68418.m08000 zinc finger protein-related 31 0.85
At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04... 31 0.85
At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.5
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.5
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 30 1.5
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04... 30 1.5
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 30 1.5
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 30 1.5
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 30 1.5
At2g21420.1 68415.m02549 zinc finger protein-related contains lo... 30 1.5
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 30 1.5
At4g27310.1 68417.m03918 zinc finger (B-box type) family protein... 29 2.0
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 29 2.0
At1g12830.1 68414.m01490 expressed protein 29 2.0
At5g16030.1 68418.m01874 expressed protein 29 2.6
At2g11910.2 68415.m01278 expressed protein 29 2.6
At2g11910.1 68415.m01277 expressed protein 29 2.6
At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b... 29 2.6
At5g62750.1 68418.m07877 expressed protein predicted proteins, C... 29 3.4
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 29 3.4
At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2 (e... 29 3.4
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 29 3.4
At3g17160.1 68416.m02189 expressed protein 29 3.4
At1g79170.1 68414.m09231 hypothetical protein 29 3.4
At1g48400.1 68414.m05406 F-box family protein contains F-box dom... 29 3.4
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 3.4
At5g60550.1 68418.m07592 protein kinase family protein contains ... 28 4.5
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 28 4.5
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 28 4.5
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 28 4.5
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 28 4.5
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 28 6.0
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 28 6.0
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 28 6.0
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 28 6.0
At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RF... 28 6.0
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 28 6.0
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 28 6.0
At1g33040.1 68414.m04068 nascent polypeptide-associated complex ... 28 6.0
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 28 6.0
At3g56360.1 68416.m06268 expressed protein unknown protein 110K5... 27 7.9
At2g22080.1 68415.m02622 expressed protein 27 7.9
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ... 27 7.9
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 27 7.9
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta... 27 7.9
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
+D+ +DE E +E + + DE ++DQ P+ + GD+AEED
Sbjct: 30 QDLQEKDETKEEKEGDEEVKHDEAEEDQEVVKPNDAEEDDDGDDAEED 77
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +2
Query: 305 DEANEAREL------ERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKR 466
DEA E +E+ E DGD+ ++D+ +D A+ +E EE+ + + +R
Sbjct: 51 DEAEEDQEVVKPNDAEEDDDGDDAEEDEEEEVEAEEDEEAEEEEEEEEEEEEEEEDSKER 110
>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q9P6R9 Cell
cycle control protein cwf22 {Schizosaccharomyces pombe};
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 900
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 296 FLQDEAN-EARELERVIDGDEFDDD-QRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRV 469
F+++E EA + E + D + D+D ASS D+D+ + DE +E+ R+ + +T V
Sbjct: 589 FVENEKKYEALKKELLGDEESEDEDGSDASSEDNDEEEDESDEEDEEQMRIRDETETNLV 648
>At5g07170.1 68418.m00817 hypothetical protein
Length = 542
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVRNPRFILNPARLTGPRG 523
D D+ DDD+ D DD+ D+ ++D D ++K V R P
Sbjct: 109 DADDTDDDEDDDDDDDDDDDDDDDDDDDDDDDDDDESKDSEVEEEEGDDDLRMRKIDPET 168
Query: 524 IQVIPEHFKDFKF 562
+ + E F KF
Sbjct: 169 MDIFAEDFSLEKF 181
>At3g50550.1 68416.m05528 expressed protein isoform contains a
non-consensus AT donor site at intron 1
Length = 95
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVD 445
+D+ E R L D + +DD S+ DSDD+ + D+ EE+ D
Sbjct: 34 EDDEEEDRNLSGD-DSESSEDDYTDSNSDSDDDDEEDDDDEEEEEEED 80
>At3g14670.1 68416.m01856 hypothetical protein
Length = 232
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 311 ANEARELERVIDGDEFDDD-QRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVRNP 481
A + E+ + DGD + D D + + + D E+D + DP+ +T+ V++NP
Sbjct: 154 AMKINEMGQENDGDPKEKDGDLEKDGDQEKDPKEKDPKEKDPKEKDPKRRTRMVLQNP 211
>At4g03565.1 68417.m00490 expressed protein
Length = 263
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 287 EDVFLQDEANEARELE-RVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRR 439
ED + D E + E +GDE+D + D DD++ + D E DT R
Sbjct: 30 EDDYSSDGEKEGEDYESNGEEGDEYDGESNEEEDDDDDDN-ESDREEGDTER 80
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 30.7 bits (66), Expect = 0.85
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
+DE + E + D D+ DDD + D DD+ DE E+D
Sbjct: 81 EDEDEDEDEDDDDDDDDDDDDDADDADDDEDDDDEDDDEDEDD 123
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
ED ++ +E + + D D+ DDD + D +D+ + D+ +ED
Sbjct: 75 EDADADEDEDEDEDEDDDDDDDDDDDDDADDADDDEDDDDEDDDEDED 122
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQ 451
+DE +A E E D DE +DD D DD++ D+ E+D D +
Sbjct: 73 EDEDADADEDE---DEDEDEDDDDDDDDDDDDDADDADDDEDDDDEDDDE 119
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 305 DEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRV 442
D+A++A + E D DE DD+ D DD + + + E D+ R+
Sbjct: 101 DDADDADDDED--DDDEDDDEDEDDDDDDDDENDEECDDEYDSHRL 144
>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 607
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEED 430
DGD+ DDD D DD+ GD+ ++D
Sbjct: 564 DGDDDDDDGDDDGDDDDDDGDDGDDDDDD 592
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEED 430
DGD+ DDD D DD+ GD+ ++D
Sbjct: 575 DGDDDDDDGDDGDDDDDDDGDDGDDDDDD 603
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEED 430
D D+ DDD D DD+ GD+ ++D
Sbjct: 561 DDDDGDDDDDDGDDDGDDDDDDGDDGDDD 589
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEED 430
DGD+ DDD D DD GD+ ++D
Sbjct: 556 DGDDGDDDD--GDDDDDDGDDDGDDDDDD 582
>At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 340
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 338 VIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQA 454
V D DEFDD + D +D D+ +ED V+ A
Sbjct: 132 VYDEDEFDDPENEDEDDDEDEYETDDDPQEDGLDVNVHA 170
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 302 QDEANEARE-LE-RVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVR 475
+DEA++A E L+ RV+DG E P+++ S KG E + ++++ R R
Sbjct: 67 KDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKIS-KGRVVEPPPKSRRSRSRSPRRSR 125
Query: 476 NPRFILNPARLTGPR 520
+PR +P R PR
Sbjct: 126 SPRRSRSPPRRRSPR 140
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 302 QDEANEARE-LE-RVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVR 475
+DEA++A E L+ RV+DG E P+++ S KG E + ++++ R R
Sbjct: 67 KDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKIS-KGRVVEPPPKSRRSRSRSPRRSR 125
Query: 476 NPRFILNPARLTGPR 520
+PR +P R PR
Sbjct: 126 SPRRSRSPPRRRSPR 140
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 308 EANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKR 466
EA E E E ID D D+D D D+ DE E+D + +KTK+
Sbjct: 297 EAIEGEEFE--IDND--DEDDIDEDEDEDEEDEDEDEEEDDEDEEEEVSKTKK 345
>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 579
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEED 430
DGD+ DDD D DD GD +E+
Sbjct: 551 DGDDDDDDDDDDDDDDDDGDGDGDGDDEE 579
>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 671
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 305 DEANEARELERVIDGDE-----FDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAK 457
DE E E E+ +G E F D + DSDD+ D+ ++D +P A+
Sbjct: 60 DEEEEEEENEQSDEGSESGSDLFSDGDEEGNNDSDDDDDDDDDDDDDDEDAEPLAE 115
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRR 439
+DE LE + D+ DDD DSD + + GD A +T R
Sbjct: 958 EDEEEWVAILEDEDEDDDDDDDDDEDDDDSDSDESLGDWANLETMR 1003
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +2
Query: 374 ASSPDSDDNSAKGDEAEEDTRRVDPQAK-TKRVVRNPRFILNPARLTGPRGIQVIPEHF- 547
+S+P N+ + + + P K TK V+ P+ L P L G+ + +F
Sbjct: 36 SSAPSQIPNNEFQRSSSKSGTSIAPAPKVTKTRVQRPK--LTPELLLSEDGLGYVLRYFP 93
Query: 548 KDFKFRGKGHXXXXXXXXXXXXXHWAYRLYP 640
K FK+RG+G W L P
Sbjct: 94 KSFKYRGRGKEVSDLGNLIRLYSEWHTHLLP 124
>At2g21420.1 68415.m02549 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 468
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVD 445
D D+ DDD D DD+ DE +ED +D
Sbjct: 394 DDDDDDDDDDDDDDDDDDDDDDDDEDDEDDGYID 427
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 308 EANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
E N+ L D D+ DDD D DD+ D+ +ED
Sbjct: 379 EWNQRGCLSPGCDDDDDDDDDDDDDDDDDDDDDDDDDDDED 419
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDD--NSAKGDEAEED 430
ED L DE N+ E D DE++DD D +D N DE E+D
Sbjct: 2161 EDTGLGDEYNDDMVDEDEEDEDEYNDDMVDEDEDDEDEYNDDMVDEDEDD 2210
>At4g27310.1 68417.m03918 zinc finger (B-box type) family protein
zinc-finger protein S3574, Oryza sativa, PIR3:JE0113
Length = 223
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRV 442
E+ ++++ + + E D +E D+D+ S + +D+ GD+ E + + V
Sbjct: 103 EEDRIREDHGDGDDAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEAENQVV 154
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 329 LERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRV 442
L R+I G++ D D S P SDD+ + ++ EE +RV
Sbjct: 300 LGRIIQGEDSDSDY--SEPKSDDDPSLDEDDEEFMKRV 335
>At1g12830.1 68414.m01490 expressed protein
Length = 213
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 326 ELERVIDGDEFDDDQRASSPDSDDNSAKGDE--AEEDTRRVDPQAKTKRVVRNPRFILN 496
E+E D D+ DDD+ D DD S D+ AE D + P +R + FI N
Sbjct: 136 EVEESDDEDDSDDDEDDEGFDEDDESDFSDDPLAEVDLDNILPSRTRRRSSQPGVFIPN 194
>At5g16030.1 68418.m01874 expressed protein
Length = 339
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVRNP 481
QD E +E E ++D+ + D S + D+ EED + + + KTK+ R P
Sbjct: 251 QDVKLEEKEKEEEKQDMSNEEDEEEEEEEKQDMSEEDDKEEEDEQ--EEEEKTKKKKRGP 308
>At2g11910.2 68415.m01278 expressed protein
Length = 168
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSA-----KGDEAEEDTRRVDPQ 451
D D+ DDD+ A D D++ A G E +E DP+
Sbjct: 74 DSDDDDDDEDADEDDDDEDDANDEDFSGGEGDEGEEEADPE 114
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 350 DEFDDDQRASSPDSD----DNSAKGDEAEEDTRRVDPQAKTK 463
DE DDD+ + D D D DE ++D R P K K
Sbjct: 127 DEDDDDEEGDNDDEDEDNEDEEEDDDEEDDDDVRQPPSKKRK 168
>At2g11910.1 68415.m01277 expressed protein
Length = 168
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSA-----KGDEAEEDTRRVDPQ 451
D D+ DDD+ A D D++ A G E +E DP+
Sbjct: 74 DSDDDDDDEDADEDDDDEDDANDEDFSGGEGDEGEEEADPE 114
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 350 DEFDDDQRASSPDSD----DNSAKGDEAEEDTRRVDPQAKTK 463
DE DDD+ + D D D DE ++D R P K K
Sbjct: 127 DEDDDDEEGDNDDEDEDNEDEEEDDDEEDDDDVRQPPSKKRK 168
>At1g21700.1 68414.m02717 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 807
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRV-DPQAKTK 463
ED+ +DE N E + D + D+ Q+ D G+ E+ R+ D A K
Sbjct: 30 EDMEEEDEENNNNNNEEMDDVENADELQQNGGATPDPGLGIGEVVEDSGSRISDFPAVVK 89
Query: 464 RVVRNP 481
RVV P
Sbjct: 90 RVVIRP 95
>At5g62750.1 68418.m07877 expressed protein predicted proteins,
Caenorhabditis elegans
Length = 124
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVRNP 481
++E N+A + E+ E D+ + DD + G+E E+ ++ + K + +NP
Sbjct: 15 EEEHNKAEKAEK----KEKKKDKDKKDKNEDDKNGGGEEGEDQEKKSKKKDKKAKKEKNP 70
Query: 482 RFILNPARL 508
+P +L
Sbjct: 71 EDKKDPEKL 79
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 299 LQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVD-PQAKTKRVVR 475
+++E E E E +DDQ+ + + KGDE +E + + + K K VV+
Sbjct: 339 VKEEGKERVEEEEKEKEKVKEDDQKEKVEEEEKEKVKGDEEKEKVKEEESAEGKKKEVVK 398
Query: 476 NPR 484
+
Sbjct: 399 GKK 401
>At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2
(eEF1Balpha2) identical to elongation factor 1B
alpha-subunit [Arabidopsis thaliana] GI:6686821
Length = 224
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 374 ASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVRNPR 484
A++ D DD GDE EE+ + + + K+ + P+
Sbjct: 95 AAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPK 131
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEE 427
+D+ +E + ++ DG DDD + D DD+ D+ +E
Sbjct: 108 KDDDDEKKHKDKKKDGHNDDDDSDDDTDDDDDDDDDDDDDDE 149
>At3g17160.1 68416.m02189 expressed protein
Length = 165
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
E+V D EA E + + DDD D DD +E EED
Sbjct: 35 EEVTGGDGEGEANVEEEDDEAENEDDDDDDDDDDDDDEDEDDEEGEED 82
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED----TRRVDPQA 454
ED+ + E+E D +FD ++ + D + D+ +ED + +P +
Sbjct: 81 EDLGTEYLVRPVGEVEDEDDASDFDPEENGLDEEEGDEEIEEDDVDEDISLSAGKSEPLS 140
Query: 455 KTKRVVRN 478
K KRV ++
Sbjct: 141 KRKRVAKD 148
>At1g79170.1 68414.m09231 hypothetical protein
Length = 84
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVVRNP 481
DGD DD+ + +SDDNS G + + +T V P A V P
Sbjct: 16 DGDG-DDNNSGADGNSDDNSG-GADGDSETTMVVPMAMVTTTVAVP 59
>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
Pfam:PF00646
Length = 513
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQA 454
D D+ DDD D DD+ D+ + D V+P+A
Sbjct: 299 DDDDDDDDDDDDDDDDDDDDDDDDDDDGDYYIVEPKA 335
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 323 RELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRV 442
+ L R+I G++ D D S P +DD+ + ++ EE +RV
Sbjct: 431 KALGRIIQGEDSDSDY--SEPKNDDDPSLDEDDEEFMKRV 468
>At5g60550.1 68418.m07592 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 407
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 356 FDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKR 466
+DDD S DSD S E EED V+ ++++KR
Sbjct: 32 YDDDTH--SCDSDVTSTARGEEEEDEEEVEQKSRSKR 66
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 317 EARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
E + E + DE D+ + DD+S KG + +ED
Sbjct: 61 EVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDED 98
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTK 463
+DE+ E + E+ +D DE D D D ++ ++ +E EE ++ +P K +
Sbjct: 80 EDESEEDDDSEKGMDVDEDDSD------DDEEEDSEDEEEEETPKKPEPINKKR 127
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 308 EANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRV 469
E++E E + + +E DD ++ D DD+ +E ED + K + +
Sbjct: 70 ESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETPKKPEPI 123
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 317 EARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
E + E + DE D+ + DD+S KG + +ED
Sbjct: 144 EVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDED 181
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTK 463
+DE+ E + E+ +D DE D D D ++ ++ +E EE ++ +P K +
Sbjct: 163 EDESEEDDDSEKGMDVDEDDSD------DDEEEDSEDEEEEETPKKPEPINKKR 210
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 308 EANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRV 469
E++E E + + +E DD ++ D DD+ +E ED + K + +
Sbjct: 153 ESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETPKKPEPI 206
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 290 DVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRV 469
D FL++E + R+ +DDD S +S++ G+E E++ K KR+
Sbjct: 23 DPFLEEETEKRRKFN-------YDDDDDIESVESEEEGKVGEEVEDEFAHETVGEKRKRL 75
Query: 470 VRN 478
+
Sbjct: 76 AED 78
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSD 394
ED F ++E E E E + DG E + DQR SP+ +
Sbjct: 185 EDDFEEEEEKE--ENEGIADGSEDEMDQRRKSPERE 218
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 311 ANEARELERVIDGDEF--DDDQRASSPDSDDNSAKG--DEAEEDTRRVD 445
AN E+ER DG ++++R+S+ D D N K +E ED R D
Sbjct: 143 ANPVEEVERQDDGLAVIEEEEERSSASDEDVNVEKSVEEEGNEDERDKD 191
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 305 DEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
D+ ++A E + +D D+ +++ + D D A+G E EE+
Sbjct: 196 DDVDDAEEKQ--VDDDDEVEEKEVENTDDDKKEAEGKEEEEE 235
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 338 VIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
V D D+ DD+ S D DD+S + + E D
Sbjct: 410 VDDDDDSDDESSEESSDDDDSSEEEENGEVD 440
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/46 (19%), Positives = 26/46 (56%)
Frame = +2
Query: 302 QDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRR 439
+++ E +E E +G+E ++++ ++ + G+E+ +D+ R
Sbjct: 90 EEKEEEEKEEEEEEEGEEEEEEEEEEEEKEEEENVGGEESSDDSTR 135
>At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RFC3)
annotation temporarily based on supporting cDNA
gi|15620809|dbj|AB057424.1|; contains TIGRfam TIGR00166
and Pfam PF01250 profiles ribosomal protein S6.
Length = 314
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 290 DVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVD 445
D + ++ E V GDE+ DD + D++ +G++ EED ++
Sbjct: 212 DEAITEDCPPPPEFHSVRAGDEYYDDDEEEEIEEDEDEGEGED-EEDADNIE 262
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 308 EANEARELERVIDGDEFDDD---QRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKR 466
EA EA +L+ D DE D+D + D +D+ + DE +++ D K+K+
Sbjct: 297 EAVEADDLDIEDDDDEIDEDDDEE--DEEDDEDDEEEDDEDDDEEEEADQGKKSKK 350
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 344 DGDEFDDDQRASSPDSDDNSAKGDEAEED 430
D +E D+D+ + + DD+ D+ EED
Sbjct: 280 DEEEADEDEESEEEEDDDDDDDDDDEEED 308
>At1g33040.1 68414.m04068 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to alpha-NAC,
non-muscle form [Mus musculus] GI:1666690; contains Pfam
profile PF01849: NAC domain
Length = 209
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 329 LERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKRVV 472
+E V DG+E DDD+ D +D +G+ E+ ++ + K+++ V
Sbjct: 30 VEDVKDGEEEDDDE-----DDEDVEVEGEGGNENAKQSRSEKKSRKAV 72
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 287 EDVFLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEE 427
E + + E + A +L+R +D + DDD D DD+ D+ E
Sbjct: 286 EHMVVGKEDDLAGDLKRNLDEENGDDDIEDEDDDDDDDDDDDDDVNE 332
>At3g56360.1 68416.m06268 expressed protein unknown protein 110K5.12
- Sorghum bicolor, TREMBL:AF124045_5
Length = 233
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 329 LERVIDGDEFDDDQRASSPDSDDNSAKGDEAE---EDTRRVDPQAKTKRV 469
+E++ DGD DDD +D SA G A+ DT V KT RV
Sbjct: 147 VEKLADGDIADDDDHDGGACGEDTSAWGIVAQGRGSDTGPVCYLLKTTRV 196
>At2g22080.1 68415.m02622 expressed protein
Length = 177
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 305 DEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEED 430
D EA + + +GD+ +DD+ + ++DD + DE E D
Sbjct: 100 DLNGEAGDNDDEPEGDDGNDDEDDDNHENDDEDEEEDEDEND 141
>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 538
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 296 FLQDEANEARELERVIDGDEFDDDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKTKR-VV 472
F N+ R + VI + DD++ D +G+E EED P K K+ +
Sbjct: 63 FCSFAVNKRRSGDSVIVESDDDDEEDDEDWGEFDGEDEGEEEEEDEGEFLPMDKMKKWLE 122
Query: 473 RNPR 484
+ PR
Sbjct: 123 KKPR 126
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 389 SDDNSAKGDEAEEDTRRVDPQAKTKRVVRNPR 484
+DD+S K DE+E+D + +P AK K V + R
Sbjct: 90 NDDDSDKEDESEDDAVKSEP-AKLKTVAKVTR 120
>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
antigen-related contains weak similarity to C protein
immunoglobulin-A-binding beta antigen [Streptococcus
agalactiae] gi|18028989|gb|AAL56250
Length = 731
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 320 ARELERVIDGDEFD---DDQRASSPDSDDNSAKGDEAEEDTRRVDPQAKT 460
+R +E + DG++ D++ + DS+DN+ K + E DP + +
Sbjct: 238 SRIVESISDGEDSSSETDEEEEENQDSEDNNTKDNVTVESLSSEDPSSSS 287
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,600
Number of Sequences: 28952
Number of extensions: 196845
Number of successful extensions: 1195
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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