Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h14
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 41 1e-04
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 34 0.022
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 0.64
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 29 0.84
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 27 3.4
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 4.5
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 26 5.9
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.9
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 25 7.8
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 7.8
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/115 (22%), Positives = 48/115 (41%)
Frame = +2
Query: 278 TETYNGVKQYKQVRYYGNEAYLRHTQHLVANNGQIQLPAGPQSLPFRFQIPHTAPSTVAG 457
T ++ G+K++ R E + H + NN +++ + +P P T+
Sbjct: 46 TASFTGLKKFPTERQLPLECHFNHIDWDLGNNFKVKEGVF-YTFDIIAPLPRCTPRTIVT 104
Query: 458 ERGNINYKITARLIQANNSAEELGTIFEVVAPFDLNLANDTVKQPVNFELEETDA 622
+ G+I+YK+T +L ++ VV PF LN Q + + DA
Sbjct: 105 QEGSISYKLTVKLYTEDDCRMPKSANVPVVVPFTLNPDRIPESQHIRYGAPLNDA 159
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 33.9 bits (74), Expect = 0.022
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +2
Query: 176 VTGSVNFTLDRPITVQALFVEATGEAVVEWIEKETETYNGVKQYKQ--VRYYGNEAYLRH 349
++GSV L+ I+V+A+ ++ G+ + W E G + KQ V Y N ++ +
Sbjct: 39 LSGSVVLCLNEAISVKAISLKLVGKCRISWSEPSPTVRGGQRHNKQEYVVYEKNWIFVPY 98
Query: 350 TQHLVANNGQIQLPAGPQSLPFRFQIPHTAPSTVAG 457
T AN L AG PF +P +V G
Sbjct: 99 TG---ANR---TLRAGNYEYPFHVMLPGDIAESVEG 128
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +2
Query: 425 IPHTAPSTVAGERGNINYKITARLIQANNSAEELGTIFEVVAPFDLNLANDTVKQPVNFE 604
+ H T+ N + T+ +AN++ E EV PFD + AN++
Sbjct: 1008 VQHPNSETIPSSTENQYFDTTSGAFEANSNTEVTVNSNEVSQPFDFDTANESDNDDDELP 1067
Query: 605 LEETDAG 625
+++ +G
Sbjct: 1068 VQQVVSG 1074
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 28.7 bits (61), Expect = 0.84
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 434 TAPSTVAGERGNINYK 481
TAPST ERGN+NY+
Sbjct: 493 TAPSTTIDERGNLNYE 508
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 590 PVNFELEETDAGCSCFFGSGEISVKITLPVTG 685
P N ELEETDAG ++ K+ + G
Sbjct: 87 PTNNELEETDAGFDSYWNKITAKAKVVSSLLG 118
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +2
Query: 161 YSGQIVTGSVNFTLDRPITVQALFVEATGEAVVEWIEKETE-TYNGVKQYKQVRYYGNEA 337
Y G++ + +D TVQ F EAT + + E I K + Y K+ G E
Sbjct: 653 YGMSPTVGTIAYPIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLEN 712
Query: 338 YL-RHTQHLVANNGQIQLPAGPQSLPFR 418
R Q V +++ GP+ ++
Sbjct: 713 IAQRLLQKEVITYNEVETILGPRPYAYK 740
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 410 PFRFQIPHTAPSTVAGERGNINYKITARLIQANNSAEELGTIF 538
P PH +PS ++ ++ N+ + LIQ N+++++ TIF
Sbjct: 523 PIGHSTPHNSPSLLSVKKRQNNHIRSNTLIQLNSNSKD-STIF 564
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 565 VQIKRSNYFKDCPQFFCR---IISLNKASSNLVIDIASFTCHC 446
+Q +++ P R I +K +S LV +IAS C C
Sbjct: 171 IQTSSQQKYEEIPDIQARRLYFIEADKEASTLVTEIASLACSC 213
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 559 IKRSNYFKDCPQFFCRI 509
++ SN FKD + FCRI
Sbjct: 421 VRMSNEFKDIAELFCRI 437
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 288 YVSVSFSIHSTTASPVASTNKA*TVIGRSNV 196
Y + F++ TTASP+ N IGR NV
Sbjct: 293 YDILPFNVSPTTASPIELLNCHNAPIGRCNV 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,648
Number of Sequences: 5004
Number of extensions: 57293
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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