Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h14
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75900.1 68414.m08816 family II extracellular lipase 3 (EXL3)...    30   1.3  
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa...    29   3.9  
At5g59845.1 68418.m07504 gibberellin-regulated family protein si...    28   6.8  
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]...    28   6.8  

>At1g75900.1 68414.m08816 family II extracellular lipase 3 (EXL3)
           EXL3 (PMID:11431566); similar to anter-specific
           proline-rich protein (APG) SP:P40602 [Arabidopsis
           thaliana]
          Length = 364

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +2

Query: 473 NYKITARLIQANNSA--EELGTIFEVVAPFDLNLAN---DTVKQPVNFELEETDAGCSCF 637
           NY   A+L  +  S   + L      + P  +N+ +   D ++ P N+  E ++ GC C 
Sbjct: 253 NYNEAAKLFNSKLSPKLDSLRKTLPGIKPIYINIYDPLFDIIQNPANYGFEVSNKGC-CG 311

Query: 638 FGSGEISVKITLPVTGYCP 694
            G+ E++V      +  CP
Sbjct: 312 TGAIEVAVLCNKITSSVCP 330


>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 360

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 592 GLLNCVICKVQIKRSNYFKDCPQFFCRIIS 503
           G L+C +C V+IK ++ F  C   FC++ S
Sbjct: 308 GELSCCVCMVKIKGAS-FTPCGHTFCKLCS 336


>At5g59845.1 68418.m07504 gibberellin-regulated family protein
           similar to SP|P27057 GAST1 protein precursor
           {Lycopersicon esculentum}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 89

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 124 RHHKVGLNKKCVLFWSNCNGKCKFYVRSTNYGSSFVC 234
           R  K G   +C+ + + C  KC + V S  YG+   C
Sbjct: 37  RCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDEC 73


>At3g44670.1 68416.m04804 disease resistance protein
           RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
           signature TIR-NBS-LRR exists, suggestive of a disease
           resistance protein. Closest Col-0 homolog to both RPP1
           Ws-A and RPP1 Ws-C
          Length = 872

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +2

Query: 554 FDLNLANDTVKQPVNFELEETD----AGCSCFFGSGEISVKI 667
           FDL+  ++ V+ P+N  L+  D    AGCS      EIS KI
Sbjct: 538 FDLSNCSNLVELPININLKFLDTLNLAGCSQLKSFPEISTKI 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,817
Number of Sequences: 28952
Number of extensions: 285628
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)