Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h13
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-6|AAA68338.1|  188|Caenorhabditis elegans Hypothetical pr...    62   4e-10
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF047656-12|AAC05111.1|  168|Caenorhabditis elegans Hypothetical...    27   7.2  

>U28928-6|AAA68338.1|  188|Caenorhabditis elegans Hypothetical
           protein C44B7.7 protein.
          Length = 188

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 33/75 (44%), Positives = 42/75 (56%)
 Frame = +1

Query: 298 NHQLDFIKYSEHWRGASATIIPTEHAHVWGAIWRLHDQDLPSLDRQEGVDTNWYFAKSVN 477
           N +L+F  YSE W+GA ATI   E   VWG +W++ ++   SLD QE      Y    V 
Sbjct: 55  NFRLEFANYSERWQGALATIKEAEGKEVWGCVWKMPNEYSDSLDEQE----FGYHRLMVP 110

Query: 478 VMTSDGVSVQCRTYQ 522
           V T  GV + CRTYQ
Sbjct: 111 VQTPKGV-ITCRTYQ 124



 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 191 FLYFAYGSNLFKKRIRINNPTAEFLGVGRLD 283
           F YFA+GSNL   RIR     AE+   G+LD
Sbjct: 24  FYYFAFGSNLLGDRIRYRQKGAEYDCNGKLD 54


>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
            F21H12.6 protein.
          Length = 1374

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 352  TIIPTEHAHVWGAIWRLHDQDLPSLDRQEGVDTNWYFAKSVNVMTSDGVSV 504
            TI+PT  + + G    L D DL  +D+ E +    YF    +   + G+S+
Sbjct: 1019 TIVPTSGSFLAGTFSALKDSDLSDVDKSEVI----YFLSEYSTRPTKGLSM 1065


>AF047656-12|AAC05111.1|  168|Caenorhabditis elegans Hypothetical
           protein F17E9.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 470 DLAKYQFVSTPSCLSNDGKS 411
           D+ K+ F  T SC+SN G S
Sbjct: 21  DVTKFHFTGTLSCISNSGSS 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,566,542
Number of Sequences: 27780
Number of extensions: 264550
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)