Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h13
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -2

Query: 304 DDSKMQHIKSANS*KLSCWIVDTDTFFKQITPIRKIQ 194
           DD +  +I + +   +SC ++D +TF + I+ + +I+
Sbjct: 297 DDLRTANIIADDPEGVSCLVIDRETFNQLISSLDEIR 333


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 213 LPYAKYKKVSLIGSIILR 160
           LPY KYK +++I ++ +R
Sbjct: 318 LPYYKYKYLNVINALEMR 335


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 213 LPYAKYKKVSLIGSIILR 160
           LPY KYK +++I ++ +R
Sbjct: 318 LPYYKYKYLNVINALEMR 335


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 404 CSLHIAPQTWACSVGII 354
           CS+ +A   W C+  I+
Sbjct: 138 CSIWLAVDVWMCTASIL 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,790
Number of Sequences: 438
Number of extensions: 3120
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)