Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h12
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.3  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   3.0  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   3.9  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   3.9  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   3.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   5.2  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    26   5.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   5.2  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   6.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    25   9.1  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   9.1  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 318  EYHCHTCNTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA 497
            EY  H       LN  T   +D SR    +KN     E  + + +QE+  L+ ++E +++
Sbjct: 1297 EYKRHNQEILLSLNSSTSTSSDASR----LKNELVSKENLIEELNQEIGHLKSELETVKS 1352

Query: 498  LANTVETK 521
             +  +E +
Sbjct: 1353 KSEDLENE 1360


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +3

Query: 240 KPWSFLSGFYSFMIMCCLLSVIYLMLEYHCHT-CNTKCDLNGITRNINDISRNLSLMKNN 416
           + W  +  FY+  I+  +   IYL L+Y C    +    L+ +  + N  ++   L KN 
Sbjct: 209 RDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNA 268

Query: 417 YEDLEIKLSKFSQELPKLEGQM-EILEALANTVETKDFGWNPNSPLLLN 560
            +D  + L     ++  L G+  E +  L  T   KD  WN +   L++
Sbjct: 269 IQDYLVSLK--ITDIRMLGGKFGEEIINLLGTDSIKDV-WNMSMDFLID 314


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 354 LNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQ 455
           ++ I    N+I   L  MK  +E  E KLS+FS+
Sbjct: 115 IDQILGQTNNIESTLLSMKEKFESSEKKLSEFSE 148


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 603 NFLNQIQNAFEFSLHSEVKENSDSIQNPLFPQCS 502
           +++N++     FS+++  KEN D++ N +F  CS
Sbjct: 168 SYINELLLELSFSIYT--KENEDALFNNVFRPCS 199


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 562 QREFKRILYLIQEILVKWPNRI 627
           Q+ ++  +YL   +L+K+PNR+
Sbjct: 230 QKNYEESIYLYARLLIKFPNRL 251


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 363 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLE 473
           ++  I D S+   L+KN     E+ LS  S +LP  E
Sbjct: 598 VSATIKDESKTFELLKNIQRKYELILSGSSVDLPSAE 634


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 573 EFSLHSEVKENSDSIQNPLFP 511
           E  +HS V E +D+I+NP  P
Sbjct: 384 ELEVHSTVPEPNDAIENPEIP 404


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 363 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALANTVET 518
           I   IND+   +++   + EDLE   S F++++ + +   + LE   + +E+
Sbjct: 280 INTTINDLKSQMTITDESSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLES 331


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -1

Query: 588 IQNAFEFSLHSEVKENSDSIQNPLFPQCSPGLQVFPFV 475
           ++N    +L  +++E +DS+ +P F + SP    + ++
Sbjct: 148 LRNYHYLNLDQDIQEENDSLISPFFFRISPNESAYDYL 185


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 444 KFSQELPKLEGQMEILEALANTVETKDFGWNPNSPLLLN 560
           KFSQ+  KLE +  +L  L++    +++   P   LLLN
Sbjct: 55  KFSQQTFKLENEYFLLRQLSSHPNGRNYAIAPAYILLLN 93


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 578 RLNSLCIQK*RRIRIPSKILCFHSV 504
           RL  LC+QK RR+ IP     F  +
Sbjct: 199 RLFCLCLQKKRRVLIPFAFTSFRKI 223


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 439 YQSFLKSYLSLKDKWKYLKPWRTLWKQRIL 528
           Y +  +   SLK+ ++++  WRT  KQ I+
Sbjct: 66  YATSWEKVKSLKELYEHISSWRTQGKQHIV 95


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 436 NYQSFLKSYLSLKDKWKYLKPWRTLWKQRILDGIRILL 549
           +Y  FL +  SL+   ++  PW+ LW+    D I  LL
Sbjct: 320 DYMKFLSNKTSLEGA-RFGLPWKRLWQNAKADEIDRLL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,446
Number of Sequences: 5004
Number of extensions: 50312
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)