Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h09
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 0.65
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 29 0.86
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 3.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.5
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 26 6.0
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 26 6.0
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 8.0
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 25 8.0
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.0
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 8.0
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.65
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +2
Query: 314 DIAIQQDMNLSLDPRKQLMRKKLEDVEFESDADD 415
D++++QD + + +K ++K++ ++E +S ADD
Sbjct: 330 DLSVEQDSAIFKEQKKMKIQKRMRELETQSFADD 363
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.86
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 347 LDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEK 496
+D ++K +VEF ++ N+L N T+F+N +ES F +
Sbjct: 608 IDAENLRIKKATTEVEFTEVTPAEDQNALASSNIETEFLNALESVSEFNE 657
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 191 PAKSLRAGSILVHINCFKLSNLELMAEKENSVCIVFQK 304
P K R G+ NC +LEL EK ++C FQK
Sbjct: 40 PCKFFRQGTCTSGKNCIFSHDLELATEK--TICKYFQK 75
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 401 SDADDKNANSLNVINNTTKFINGIESAL 484
SD DD ++NS N N+TT+ N + L
Sbjct: 981 SDIDDNDSNSSNTSNHTTENANAQQRKL 1008
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 356 RKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEKDFN 505
RKQ+ R KLE+ F+ DD + TK + EKD N
Sbjct: 834 RKQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDIN 883
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = +2
Query: 410 DDKNANSLNVINNTTKFINGIESALTFEKDFNSLKKTYEKIMKSI 544
++K ++S + + +SAL+F+KD+ ++ ++++ S+
Sbjct: 1024 EEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSL 1068
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 185 YYKNQLIQKVNIIMQENVLTLTLPQNIKTSIISILNYLYY 66
Y+ NQL++ + + M N++TL + +I+++L Y Y+
Sbjct: 32 YWWNQLLKVIPMSMAPNLITLIGLGFVVINILTMLVYKYH 71
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 475 FNAIYKFCRIIDHIQ*ICIFVICIAFKFHIFEFL 374
FN I CR+I I I + I F F++ F+
Sbjct: 276 FNIIRLACRVIADIPQITLIFISFLFSFYVLIFI 309
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 329 QDMNLSLDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESA 481
++ + LD + Q+ ++ + D + NS++ + N T+ +G ESA
Sbjct: 614 ENSSAPLDLQSQICMAMVDQLFHSKVVLDPSFNSIDEVTNVTRKFSGFESA 664
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 204 RLFAGNLLQKST--DSKSKYYHARKCAN 127
R+F NL +K + D+KS Y+H R+ N
Sbjct: 281 RMFYSNLYKKLSHRDAKSIYHHVRRAYN 308
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 338 NLSLDPRKQLMRKKLEDVEFESDADDKN 421
+L++D ++ LED+ F++DADD N
Sbjct: 98 DLNIDVESEVF--DLEDINFQNDADDIN 123
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 419 NANSLNVINNTTKFINGIESALTFE 493
N S+NV+NN KF + + +TFE
Sbjct: 5 NILSVNVLNNPAKFSDPYKFEITFE 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,338
Number of Sequences: 5004
Number of extensions: 46528
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -