Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h08
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 266 1e-71
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 266 1e-71
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 266 1e-71
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 265 2e-71
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 264 3e-71
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 48 4e-06
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.013
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 2.5
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 3.4
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 3.4
At4g14280.1 68417.m02201 hypothetical protein 28 5.9
At3g55160.1 68416.m06126 expressed protein 28 5.9
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 7.8
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 7.8
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 7.8
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 7.8
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 266 bits (651), Expect = 1e-71
Identities = 126/167 (75%), Positives = 143/167 (85%)
Frame = +2
Query: 122 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 301
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 302 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 481
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 482 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 622
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 266 bits (651), Expect = 1e-71
Identities = 126/167 (75%), Positives = 143/167 (85%)
Frame = +2
Query: 122 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 301
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 302 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 481
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 482 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 622
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 266 bits (651), Expect = 1e-71
Identities = 126/167 (75%), Positives = 143/167 (85%)
Frame = +2
Query: 122 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 301
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 302 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 481
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 482 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 622
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 265 bits (649), Expect = 2e-71
Identities = 125/165 (75%), Positives = 142/165 (86%)
Frame = +2
Query: 128 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 307
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 308 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 487
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 488 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 622
VVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 121 VVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILN 165
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 264 bits (647), Expect = 3e-71
Identities = 125/165 (75%), Positives = 142/165 (86%)
Frame = +2
Query: 128 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 307
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 308 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 487
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 488 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 622
VVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 165
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/130 (23%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Frame = +2
Query: 122 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 292
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 293 KIAVHCTVRGAKAEEILERGL-----KVREYE-LRRDNFSATGNFGFGIQEH-IDLGIKY 451
+ + T+RG L+R + + R+++ + +F GN+ G+++ + I++
Sbjct: 139 PLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRF 198
Query: 452 DPSIGIYGLD 481
D G+D
Sbjct: 199 DAVGKTRGMD 208
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +2
Query: 335 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 499
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 411 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLA 250
P++ V K + +SY +TFKP S + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 332 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 496
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 294 FSLRRIPKDRTVYLALENTGCCPVSCSN-TLAARVSLSPDSPTHM 163
FSLR P DR+ E P CSN + ++ L P++ TH+
Sbjct: 243 FSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHV 287
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 429 TLTWVSSTIPQLEFMDWTFTS 491
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +3
Query: 213 WSNSQDNS----LYFPR--LGIQCGLLVSVVMKRLLSIVQSEELKQKKSLRGV*KSENMN 374
W ++NS L+FP GI +V +++ +V S +++ + + EN++
Sbjct: 833 WDRLRENSFRILLHFPTPFTGISSEDMVQIIIPWAKQLVCSPRVRESDA-----ECENID 887
Query: 375 CGVTTSPPRVILASVFKNTLTWVSSTIPQLE 467
C S P+ + K+ + W+ +++ + E
Sbjct: 888 CRNQNSKPKYPVVEYIKSLIQWLDASVTEGE 918
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 378 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 509
G+ + R+ +F + TLTW +S +P L + W + S ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 121 KCNAESSYQKALLEHMCW 174
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 121 KCNAESSYQKALLEHMCW 174
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 339 ISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVSCSNTL 205
I S L R +W + SLR++ KDR A++ GC + +N +
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRK---AVKVPGCSSIEVNNVV 479
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,455
Number of Sequences: 28952
Number of extensions: 292997
Number of successful extensions: 846
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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