Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h07
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.13 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.41 
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.41 
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    29   0.54 
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    26   5.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.7  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   6.7  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   6.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   6.7  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.8  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   8.8  

>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +2

Query: 35  CVFYLKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTACIDYDGFL---NMK 205
           C+   K++    ++ V+L    KL  ++ FT  FV+ L A + +TAC    G+L     +
Sbjct: 113 CILNYKLEWT--YSGVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRMLGYLGTPRSR 170

Query: 206 LEHSLNCNDEKFCHRG-SITLKSIRTGVPIIDQI 304
              +   N++KF     S   + +  G+ +   +
Sbjct: 171 FHDNRRWNEQKFMELAVSAVEEQLSNGIQLFSNV 204


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 397 NGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYK 513
           NG+  V+N W+L NG  I +   +A++   +K+ T   K
Sbjct: 653 NGIQRVVNYWLLHNGFSIGIGDTIADA-DTMKEVTRTVK 690


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 460 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 621
           FQ+ +  Q  +   +E  LN+  Y  Y E+ P P   S  ++ E + E  E  E
Sbjct: 89  FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEEIEESEE 142


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +1

Query: 487 LKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 621
           +++ TNE K++    L   ++AP+P+ +++I ++   + A +KGE
Sbjct: 6   VERNTNETKISVAIAL---DKAPLPEESNFIDELITSKHANQKGE 47


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 328 STEGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNE 507
           S E  N+K  ++ S+V+ Q  L+ GL++     I+P+  VI    + A        A   
Sbjct: 43  SLEEINTKYNDFFSNVQDQFELQRGLNNCFAYDIVPSSDVIEQALRAARRVNDFPTAVRI 102

Query: 508 YK 513
           ++
Sbjct: 103 FE 104


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 263  LKSIRTGVPIIDQILFNEKHL 325
            L  +R  +PI+D+  F EKHL
Sbjct: 1380 LNFLRNFIPILDEQKFREKHL 1400


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 394 ENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKL 516
           EN   + +   ++PNG  IAVN Q  N    LK A  E+KL
Sbjct: 477 ENRFGESVTVDLIPNGRNIAVNNQ--NKMNYLK-ALTEHKL 514


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 111 IINLFKYINT-TLVNLITSWIFK*KTH 34
           I+ ++ +  T +L NL++SWI   KTH
Sbjct: 299 IMYVYSWTGTVSLCNLVSSWILNTKTH 325


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 310 QRKAS*STEGENSKGTEYLSSVKAQAFLENGLSDVINAWILPN 438
           +R A+     EN+KG+E   S K    +++  S ++N ++ P+
Sbjct: 240 KRGAAALANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPD 282


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 23  IIYGCVFYLKIQLVIKFTNVV 85
           I Y C F+LK Q  +KF  +V
Sbjct: 81  IFYDCFFFLKEQQTLKFIIIV 101


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 8  PFKFEIIYGCVFYLKIQLVIKFTNV 82
          P+KFEI + C+  LK  L  K T V
Sbjct: 21 PYKFEITFECLEPLKSDLEWKLTYV 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,345
Number of Sequences: 5004
Number of extensions: 44653
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)