Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h07
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    31   0.56 
02_04_0610 + 24335153-24337724,24337835-24338256                       28   5.2  
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925...    28   6.9  

>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 68  KFTNVVLIYLNKLIIMQQFTLIF--VVHLTALFASTACIDYDGFLNMKLEHSL 220
           KFT VV+++  K +IM  + ++   V HL  +  S++ + Y+    ++  H L
Sbjct: 627 KFTAVVIVFKKKSVIMILYNMLSQNVFHLVEMVVSSSWLGYEALSQVEYTHML 679


>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +2

Query: 47  LKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTAC--IDYDG--FLNMKLEH 214
           +KIQ+ IK  ++ + + +K  + +   L  + H   L   TAC  IDY G  F  +  E+
Sbjct: 692 VKIQVAIKVFDLEMRWADKSFVSECEILRSIRHRNLLPILTACSTIDYSGNDFKALIYEY 751

Query: 215 SLNCNDEKFCHRGSITLKS 271
             N N + + H+ +  + S
Sbjct: 752 MPNGNLDMWLHKKNTAVAS 770


>07_03_0945 -
           22791754-22791863,22792295-22792367,22792457-22792552,
           22793268-22793331,22793957-22794008,22794525-22794622,
           22795108-22795166,22795981-22796013
          Length = 194

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 41  FYLKIQLVI-KFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTA 172
           F+LK Q  I +  N++   LNK +   +  + F+ H+ A  ASTA
Sbjct: 115 FFLKHQAKIDRILNILSKELNKFVSSHEDEIHFIEHMAARGASTA 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,744
Number of Sequences: 37544
Number of extensions: 231427
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)