Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h07
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-7|CAA21610.1| 236|Caenorhabditis elegans Hypothetical ... 36 0.031
U53339-7|AAA96203.1| 345|Caenorhabditis elegans Serpentine rece... 31 0.50
Z37092-6|CAE46667.1| 334|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z37092-5|CAA85456.1| 336|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z82262-5|CAE17771.1| 679|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical p... 27 8.2
AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin re... 27 8.2
AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily a... 27 8.2
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 27 8.2
>AL032637-7|CAA21610.1| 236|Caenorhabditis elegans Hypothetical
protein Y43F8C.7 protein.
Length = 236
Score = 35.5 bits (78), Expect = 0.031
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +1
Query: 553 PVPDTASYIQKMERDREAREKG 618
P PDTA+++QKMER++ A++ G
Sbjct: 175 PTPDTAAFVQKMEREKRAKQHG 196
>U53339-7|AAA96203.1| 345|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 13 protein.
Length = 345
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/27 (55%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
Frame = -1
Query: 132 IKVNCCIIIN--LFKYINTTLVNLITS 58
IK NC +IIN LFKYI+T+++ L+T+
Sbjct: 88 IKSNCDLIINKTLFKYIHTSVIFLLTT 114
>Z37092-6|CAE46667.1| 334|Caenorhabditis elegans Hypothetical
protein F44F4.5b protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 17 FEIIYGCVFYLKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTACID 181
F + Y +F LKI+ + + +L+Y + L + + V+ TAL S D
Sbjct: 40 FILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRSFTLSD 94
>Z37092-5|CAA85456.1| 336|Caenorhabditis elegans Hypothetical
protein F44F4.5a protein.
Length = 336
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 17 FEIIYGCVFYLKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTACID 181
F + Y +F LKI+ + + +L+Y + L + + V+ TAL S D
Sbjct: 40 FILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRSFTLSD 94
>Z82262-5|CAE17771.1| 679|Caenorhabditis elegans Hypothetical
protein C43F9.10 protein.
Length = 679
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 619 LPFHVPLCHVPFFVYMTQYRELELAQYILS 530
+ + + L H P +VY+ Y E +LA Y+L+
Sbjct: 318 ISYSLYLVHWPIYVYVKHYYENQLAAYLLA 347
>Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 497 ACFSGCVELATWKLTAITAPLGSIH 423
ACFS C E W LT I ++H
Sbjct: 465 ACFSKCAEFHDWLLTKIINAENAVH 489
>Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 497 ACFSGCVELATWKLTAITAPLGSIH 423
ACFS C E W LT I ++H
Sbjct: 465 ACFSKCAEFHDWLLTKIINAENAVH 489
>AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin
related protein 2 protein.
Length = 654
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 248 RGSITLKSIRTGVPIIDQILFNEKHLEALKVKTAKEL 358
R ++TLK + T I+D L+++ +LE L V T + +
Sbjct: 420 RHAVTLKVLPTNSKIVDMSLYSKNNLEELIVITEQSV 456
>AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform b protein.
Length = 765
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 423 CIDNIRETIFQKCLSFN 373
CID+I ET+FQ C +FN
Sbjct: 106 CIDDI-ETVFQNCYTFN 121
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 423 CIDNIRETIFQKCLSFN 373
CID+I ET+FQ C +FN
Sbjct: 106 CIDDI-ETVFQNCYTFN 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,635,615
Number of Sequences: 27780
Number of extensions: 239886
Number of successful extensions: 736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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