Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h06
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 29 0.38
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 29 0.38
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 28 1.2
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 2.0
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 2.7
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 3.6
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 6.2
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera... 25 8.3
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 8.3
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 29.5 bits (63), Expect = 0.38
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 138 FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKN 257
+G ++ ++P H +G +QRK+ Q +E + LEKS N
Sbjct: 79 YGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDN 118
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 29.5 bits (63), Expect = 0.38
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 138 FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKN 257
+G ++ ++P H +G +QRK+ Q +E + LEKS N
Sbjct: 79 YGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDN 118
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +3
Query: 81 MSKINHAEDLVEVVKDKIKFGENLIIQL--QPIQHVE-GVMKLQRKIKQEIEFL-KRLEK 248
+S+ HA DLV +++ K+G+ I + P HV+ V +L + ++I FL +++E
Sbjct: 125 VSEFEHAVDLVRYIRE--KYGDYFCIGVAAYPEGHVDSNVPELSKDPLRDIPFLIEKVEA 182
Query: 249 SKNFKIEQL 275
+F I Q+
Sbjct: 183 GADFIITQI 191
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 274 NCSILKFFDFSNLFKNSISCL 212
N SILKF F +FKN+++ L
Sbjct: 87 NLSILKFLGFEQIFKNALTGL 107
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 2.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 443 FWISCYHFGPCIALIPNNVYY 381
F I+CYH+ C++L+ ++Y
Sbjct: 66 FTIACYHYSLCLSLVALLLFY 86
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 81 MSKINHAEDLVEVVKDKIK-FGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLK 236
M+++ A L V +++K F +N + L I+ VEG +++ R ++ + EFLK
Sbjct: 904 MARVKKA--LPNVTSEEVKEFQKNKKMVLDGIELVEGDLQIIRSVEVKNEFLK 954
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 204 RKIKQEIEFLKRLEKSKN-FKIEQLACSNL 290
+K+KQ EFL+++E N F + CSNL
Sbjct: 674 QKLKQNPEFLRKMEVYNNQFSKNKELCSNL 703
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 75 LIMSKINHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQEIEF-LKRLEKS 251
++ +K+N + + + +K E +++L ++H ++ +++ +IE K+LE
Sbjct: 273 ILHTKLNSLQLIEGDLNACLKVLEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFR 332
Query: 252 KNFKIEQLA 278
K ++QL+
Sbjct: 333 KEQLLKQLS 341
>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
formyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 207
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 87 KINHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKI 212
KI H +V V + G+ +I+Q PI + + L+ KI
Sbjct: 146 KITHTGAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKI 187
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 483 LHMKISLHLKQIKILDFLLSLWSMY 409
LH+K+S + IK+L L L+ +Y
Sbjct: 511 LHLKLSKGIMDIKVLTHQLMLYDLY 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,141
Number of Sequences: 5004
Number of extensions: 49496
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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