Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h06
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16...    29   2.1  
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026           29   2.8  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    29   2.8  
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152           29   3.7  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    28   4.8  
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    28   6.4  

>02_01_0024 +
           159595-159801,159892-160017,160201-160338,160431-160526,
           160958-161200,161249-161537,161612-161781,161975-162052,
           162156-162227,162345-162449,162555-162647,162737-162829,
           163109-163235,163317-163330
          Length = 616

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 75  LIMSKINHAEDLVEVVKDKIKFGENLIIQLQPIQ 176
           L+  KIN+A DL+ +++D I+ G  ++I  + I+
Sbjct: 291 LVDKKINNARDLITILEDAIRGGYPILIVTEDIE 324


>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
          Length = 267

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 363 DNCNKLIIDIVGDQGNTWTKVIARNP 440
           D+  +L+ID+    GN W+K+ AR P
Sbjct: 72  DDEERLVIDLHAQLGNRWSKIAARLP 97


>01_01_0128 -
           1167904-1168749,1168790-1168863,1169419-1169491,
           1171148-1171398,1171442-1171687,1172220-1172415,
           1172796-1172876,1172966-1173169,1173671-1173880,
           1173953-1174174,1174437-1174480,1174974-1175052,
           1175066-1175227,1175337-1175564,1175786-1175815,
           1175905-1176273,1176356-1176571,1177202-1177683,
           1177930-1177975
          Length = 1352

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 474 KISLHLKQIKILDFLLSLWSMYCLDPQQCLLLVYYSYLCEMFYTQRAH 331
           ++SL  +  + ++ +  L SM    P+  +L+VYY+ L E+F+    H
Sbjct: 243 ELSLWQEAFRSVEDIHGLMSMVKKTPKPSVLVVYYAKLTEIFWISDCH 290


>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
          Length = 1044

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 81  MSKINHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKN 257
           ++K+   E L +V + K+K     +  L  + H+ G  KL  K+KQ+ E  + L K K+
Sbjct: 651 IAKLKDLEAL-DVRRSKVKIMPVEVFGLPCLIHLLGKFKLSDKVKQKTEVQEFLSKGKS 708


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 375  KLIIDIVGDQGNTWTKVIARNP 440
            KL+ID+    GN W+K+ AR P
Sbjct: 1763 KLVIDLHEQLGNRWSKIAARLP 1784


>12_02_0995 +
           25104303-25104486,25105164-25105275,25106466-25106554,
           25106635-25106703,25106784-25106913,25107073-25107231,
           25107364-25107736,25108070-25108182,25108429-25108624,
           25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 292 RRLEQANCSILKFFDFSNLFKNSISCLIF 206
           +RL +     L+FF  +++F +S  CL+F
Sbjct: 390 KRLVELGWKTLEFFALAHIFSSSFGCLVF 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,970,557
Number of Sequences: 37544
Number of extensions: 285980
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)