Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h06
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...    42   2e-04
Z82264-3|CAB05166.1|  277|Caenorhabditis elegans Hypothetical pr...    31   0.81 
U55367-2|AAA97988.2|  356|Caenorhabditis elegans G protein, alph...    29   2.5  
AY008132-1|AAG32085.1|  356|Caenorhabditis elegans heterotrimeri...    29   2.5  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
 Frame = +3

Query: 102 EDLVEVVKDKIKFGENLIIQLQ--PIQHVEGVMKLQRKIKQEIEFLKRLEKSKNFKIEQL 275
           +DL     +KIK  +  + +L     Q +E + +++R + +EIE L+   + K  +   +
Sbjct: 7   DDLERQRIEKIKEVQEAVAKLTGAKFQKLENLQRMERMLNKEIELLQNATR-KALETHLV 65

Query: 276 ACSNLRHLGSMVECALRPYVLAVCKTFHIDNCNKLIIDIVGDQGNTWTKVIAR 434
            C+   +   + E        AV KTF  DN + + +DIV  + N W K++ R
Sbjct: 66  TCNYAFYKSIIDEVEEMENATAVLKTFKRDNVS-VTVDIVMKEPNVWIKLVNR 117


>Z82264-3|CAB05166.1|  277|Caenorhabditis elegans Hypothetical
           protein C49C3.7 protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 17/61 (27%), Positives = 37/61 (60%)
 Frame = +3

Query: 90  INHAEDLVEVVKDKIKFGENLIIQLQPIQHVEGVMKLQRKIKQEIEFLKRLEKSKNFKIE 269
           + + ED  ++VK++    +N   +    ++VE ++K   ++K+E+EFLKR +    FK++
Sbjct: 41  LTYTEDQYKIVKEESTIYKNRF-ETAAAKNVE-LLKATDELKKELEFLKR-QPGNQFKVD 97

Query: 270 Q 272
           +
Sbjct: 98  K 98


>U55367-2|AAA97988.2|  356|Caenorhabditis elegans G protein, alpha
           subunit protein 10 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 192 MKLQRKIKQEIEFLKRLEKSKNFKIEQ 272
           MK Q K+ +EIE  K+LEK KN ++EQ
Sbjct: 13  MKDQIKVNKEIE--KQLEKKKNMQLEQ 37


>AY008132-1|AAG32085.1|  356|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 192 MKLQRKIKQEIEFLKRLEKSKNFKIEQ 272
           MK Q K+ +EIE  K+LEK KN ++EQ
Sbjct: 13  MKDQIKVNKEIE--KQLEKKKNMQLEQ 37


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 63  ALKQFYFKVPFDSCQLSV 10
           A+K+F+F +PFD C   V
Sbjct: 140 AVKEFFFSIPFDECSFQV 157


>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 453 QIKILDFLLSLWSMYCLDPQQC-LLLVYYSYLCEMFY 346
           QI IL F +   S+  +D  Q  ++++Y+SY+C  F+
Sbjct: 236 QISILFFNIGCCSILLMDHFQVKMMIIYWSYVCFNFF 272


>U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical
           protein F26A10.2 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 401 SRQYMDQSDSKKSKIFICFKCREIFIWSKIYFR 499
           S+Q  D  +  K K+F C KCR      + Y R
Sbjct: 252 SQQIEDYVEKNKQKLFSCRKCRVFLPTEEAYMR 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,977
Number of Sequences: 27780
Number of extensions: 274129
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)