Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g24
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.59 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   5.5  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 399 SDELVRSLLDGGYRHLILHPD 337
           SD  VR+LLD GYR ++ + D
Sbjct: 450 SDPQVRNLLDNGYRVILSNYD 470


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 250 HYLPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAAVKEGTD 387
           H++ E +++  VKL+    G  +    L    K K ++  V+ GT+
Sbjct: 121 HWMKESISFAKVKLTNKSNGNGQIM--LNSLHKYKPTVHLVRVGTE 164


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -1

Query: 404 SNPTSWSVPSLTAAIDILSFIQILKLCVNSSVPSLSSDNLTDLYVTSSGR*CFFRSFTAS 225
           S  +S S PS+TAA  +      +K  ++ S  S SS  +     T+S     +   +  
Sbjct: 166 STSSSASSPSVTAAPHLRDSPNYIKPQLHVSTGSTSSPTIASATYTNSANSSIWSPASID 225

Query: 224 SYLL 213
           S+ L
Sbjct: 226 SFTL 229


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 299 SSDNLTDLYVT 267
           +SDNLTD+Y T
Sbjct: 260 NSDNLTDVYFT 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,137
Number of Sequences: 336
Number of extensions: 3268
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)