Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11g24
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy... 29 0.48
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 28 1.5
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.5
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 27 2.6
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 27 3.4
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 7.8
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 25 7.8
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 7.8
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 25 7.8
>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +1
Query: 208 QDRRYEDAVKLLKKHYLPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAAVKEGTD 387
+D+ + ++ + +PE+V S++ S D + + H L ++ K+K+S+A E
Sbjct: 202 EDKSKQIILQKAHEFQIPEKVYQFSLEHSVDEDCVTKSLHTLYLFQKNKVSVANTNELLK 261
Query: 388 QLV 396
LV
Sbjct: 262 SLV 264
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 190 IRFEDLQDRRYEDAVKLLKKHYLPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAA 369
I F +L D+ ED K + L E S +S + +E ++ + W+K + SIA
Sbjct: 152 IMFPELIDKNREDIAKAAAEAALIEPQQIHSTPVSSNECKKNEPFNSKQSWVKSRWSIAV 211
Query: 370 V 372
+
Sbjct: 212 L 212
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 247 KHYLPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAAVKEGTDQLVGLLIMRIQ 420
KH LP+ V + + EGT E N W + ++ V EG L+G L IQ
Sbjct: 137 KHILPDLPQSSEVDRNSETEGTREENSNTSDWDEQNEYVSEV-EGDYNLLGSLSNDIQ 193
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +3
Query: 546 PEILQDLYSRFEESLQAQRYSKRTDKSRDS 635
PE+ +DLY+ ++++ +++ +R K +DS
Sbjct: 82 PELPEDLYNLIKKAVSVRKHLERNRKDKDS 111
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 416 IRMMSNPTSWSVPSLTAAIDILSFI 342
+ ++ NP+ ++ L AIDIL+F+
Sbjct: 645 VHLLINPSEQTIEQLNTAIDILNFV 669
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 544 RRALRKYTPASLLRCKISLLMCRARCELS 458
RR ++ Y+P S L+CK+ + + LS
Sbjct: 332 RRLVQYYSPVSFLQCKVDKISFYSNSSLS 360
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.8
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = -1
Query: 407 MSNPTSWSVPSLTAAIDILSFIQILKLCVNSSVPSLSSDNLTDLYVTSSGR*CFFRSFT- 231
+S+ S S+P+ +++ + + + +SS LSS + T + +SS SFT
Sbjct: 14 LSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTS 73
Query: 230 --ASSYLLSCKSSNLIPQGTRPQIDGALILSSNIFIFSTSASA 108
+SS++ S SS+ + A + SS+ ++S+SA
Sbjct: 74 PASSSFITSLVSSS----SQQSSSSSASLTSSSSATLTSSSSA 112
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 307 GTDEFTHNLRIWMKDKMSIAAVKEGTDQLVGLLIMRIQEKCAFSRTFSRIKITHNE--LY 480
G DE HNLR MK++ A V D++ L +R + F+ +T +E LY
Sbjct: 173 GVDEKLHNLREAMKEQKIEAFVVSMLDEVAWLYNLRGADVPYNPVFFAYSLVTLDEAFLY 232
Query: 481 TSVMKFYNEVEK 516
K EV K
Sbjct: 233 VDERKVTPEVSK 244
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 430 AFSRTFSRIKITHNELYTSVMKFYNEVEKPV 522
A R +I+ +LY S K+++EVEK V
Sbjct: 121 AILRMIVKIRNKDPDLYDSQQKYFDEVEKDV 151
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 471 RALHISNEILQRSREAGVYLRSARRPEILQDLYSRFEESLQAQ 599
R +H+++ ++ +G+Y P +L ++R+ +S AQ
Sbjct: 178 RIVHVASIAYLQAPYSGIYFPDLNLPHVLLGTFARYGQSKYAQ 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,270
Number of Sequences: 5004
Number of extensions: 56620
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -