Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g24
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009613-1|AAH09613.1|  335|Homo sapiens leucine rich repeat con...    32   2.2  
AY358131-1|AAQ88498.1|  335|Homo sapiens densin hlg protein.           32   2.2  
AL445928-6|CAH72254.1|  339|Homo sapiens leucine rich repeat con...    32   2.2  
AL445928-5|CAH72253.1|  335|Homo sapiens leucine rich repeat con...    32   2.2  

>BC009613-1|AAH09613.1|  335|Homo sapiens leucine rich repeat
           containing 39 protein.
          Length = 335

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 277 RSVKLSEDREGTDEFTHNL-RIWMKDKMSIAAVKEGTDQLVGLLIMRIQEK 426
           R  KL+ED +   EF H L RIW ++++S+  ++E   +  G +I++I+++
Sbjct: 21  RIKKLNEDLKREKEFQHKLVRIW-EERVSLTKLREKVTREDGRVILKIEKE 70


>AY358131-1|AAQ88498.1|  335|Homo sapiens densin hlg protein.
          Length = 335

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 277 RSVKLSEDREGTDEFTHNL-RIWMKDKMSIAAVKEGTDQLVGLLIMRIQEK 426
           R  KL+ED +   EF H L RIW ++++S+  ++E   +  G +I++I+++
Sbjct: 21  RIKKLNEDLKREKEFQHKLVRIW-EERVSLTKLREKVTREDGRVILKIEKE 70


>AL445928-6|CAH72254.1|  339|Homo sapiens leucine rich repeat
           containing 39 protein.
          Length = 339

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 277 RSVKLSEDREGTDEFTHNL-RIWMKDKMSIAAVKEGTDQLVGLLIMRIQEK 426
           R  KL+ED +   EF H L RIW ++++S+  ++E   +  G +I++I+++
Sbjct: 21  RIKKLNEDLKREKEFQHKLVRIW-EERVSLTKLREKVTREDGRVILKIEKE 70


>AL445928-5|CAH72253.1|  335|Homo sapiens leucine rich repeat
           containing 39 protein.
          Length = 335

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 277 RSVKLSEDREGTDEFTHNL-RIWMKDKMSIAAVKEGTDQLVGLLIMRIQEK 426
           R  KL+ED +   EF H L RIW ++++S+  ++E   +  G +I++I+++
Sbjct: 21  RIKKLNEDLKREKEFQHKLVRIW-EERVSLTKLREKVTREDGRVILKIEKE 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,508,430
Number of Sequences: 237096
Number of extensions: 1858295
Number of successful extensions: 4267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4267
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)