Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g24
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    27   0.23 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.69 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.91 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.2  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 23/65 (35%), Positives = 30/65 (46%)
 Frame = +3

Query: 456 KDNSQRALHISNEILQRSREAGVYLRSARRPEILQDLYSRFEESLQAQRYSKRTDKSRDS 635
           KD     LH   E L   R +    R +R  E  Q  Y   E S +  R + + ++SRD 
Sbjct: 248 KDRQYEKLHNEKEKLLEERTSRK--RYSRSREREQRSYKN-ENSYRKYRETSK-ERSRDR 303

Query: 636 IERER 650
           IERER
Sbjct: 304 IERER 308


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = -3

Query: 585 ILQSDYINLEVSPDAERFVNTHRLLY--FVVKFHY*CVELVVSYLYAAECTRKCT----F 424
           +L+ D++     PD+  F N   + +    +  HY  +    + LY  + T K +    F
Sbjct: 109 LLEVDWLKNMWRPDSF-FKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNF 167

Query: 423 LLYPHDE*SDELVRSLLDGGYRHLILHPDPQI 328
           L+YPHD    +L    L      +I   DP +
Sbjct: 168 LIYPHDTQECKLQMESLSHTTDEMIFQWDPDV 199


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 229 AVKLLKKHYLPEEVTYRSVKLSEDREGTDEFTH 327
           A  LL+K++LP   +Y+S  L+ ++E  D  +H
Sbjct: 430 AENLLEKNWLPVHTSYKS-GLNLEQEKKDSISH 461


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 404 SNPTSWSVPSLTAAIDI--LSFIQILKLCVNSSVP 306
           SNPT WS  ++T A++   L  + I +  ++ ++P
Sbjct: 567 SNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLP 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,239
Number of Sequences: 438
Number of extensions: 4055
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)