Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11g23
(638 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 111 3e-25
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 109 2e-24
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 98 4e-21
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 81 6e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 79 2e-15
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 65 3e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 62 4e-10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 54 8e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 7e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 7e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 2e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 4e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 4e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.006
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.010
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.030
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.040
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 35 0.040
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.052
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 33 0.12
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.12
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.16
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.16
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.21
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.28
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 32 0.37
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.37
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.49
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.49
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.49
At3g31950.1 68416.m04046 hypothetical protein 31 0.65
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 0.65
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 31 0.85
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.85
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 1.1
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 1.1
At5g47430.1 68418.m05844 expressed protein 30 1.1
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.1
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.1
At4g17410.1 68417.m02607 expressed protein 30 1.1
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.1
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.1
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.1
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.1
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 30 1.5
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 30 1.5
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.5
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.0
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 2.0
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 2.0
At5g61670.2 68418.m07738 expressed protein 29 2.6
At5g61670.1 68418.m07737 expressed protein 29 2.6
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 2.6
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.6
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 3.4
At5g21140.1 68418.m02524 expressed protein 29 3.4
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 3.4
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 3.4
At4g06479.1 68417.m00885 hypothetical protein 29 3.4
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 3.4
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 3.4
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein... 29 3.4
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 4.5
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 4.5
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 4.5
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 28 4.5
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 28 4.5
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 28 6.0
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 6.0
At4g06526.1 68417.m00938 hypothetical protein 28 6.0
At2g31850.1 68415.m03889 expressed protein 28 6.0
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 6.0
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 28 6.0
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 27 7.9
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 27 7.9
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 7.9
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 7.9
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 111 bits (268), Expect = 3e-25
Identities = 57/164 (34%), Positives = 75/164 (45%), Gaps = 31/164 (18%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 311
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 312 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 449
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 450 TQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 560
++ CY C SGH++R+C CY CGK GH +REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 109 bits (261), Expect = 2e-24
Identities = 60/171 (35%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
Frame = +3
Query: 156 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 299
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 300 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 431
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 432 GGRES---ATQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 566
G S + TCY+C GHI+R+C ++ CY CG GH++R+CD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 272
CY C GHFAR+CTQ GGV ++RD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 273 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 362
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 311
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.040
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 150 SSSVCYKCNRTGHFARECT 206
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 507 GTKTCYVCGKPGHISREC 560
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 109 bits (261), Expect = 2e-24
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 35/168 (20%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 302
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 303 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 446
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 447 ATQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 560
+ CY C +GH++R+C G+ C++CGK GH +REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 96.7 bits (230), Expect = 1e-20
Identities = 57/182 (31%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Frame = +3
Query: 135 NSPSMSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCK 302
NS S C+ C GH A++C G G S G R+ +C+ C GHFARDC+
Sbjct: 87 NSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCR 146
Query: 303 EEAD-----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGH 410
+ CY C GH+A++C + CY C GH
Sbjct: 147 QSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGH 206
Query: 411 IARNCPEGGRES---ATQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRE 557
AR+C + G + TCY C GHI++ C G + CY CG GH++R+
Sbjct: 207 FARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARD 266
Query: 558 CD 563
CD
Sbjct: 267 CD 268
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +3
Query: 156 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 308
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 309 -ADRCYRCNGTGHIAREC 359
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 311
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 381 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 560
+C+NC + GH+A++C +GG + +SG G CY+CG GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDC-DGGSGGKSFGGGGGRRSG--------GEGECYMCGDVGHFARDC 145
Query: 561 DEA 569
++
Sbjct: 146 RQS 148
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 153 SSVCYKCNRTGHFARECT 206
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 98.3 bits (234), Expect = 4e-21
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +3
Query: 156 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 335
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 336 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNCPDGT 512
GH+A C+ +E C++C K+GH AR+C R + C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 513 KTCYVCGKPGHISREC 560
K C C GHI+R+C
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +3
Query: 246 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 425
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 426 PEGGRESATQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 560
G C++C KSGH +R+C + + C C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 82.6 bits (195), Expect = 2e-16
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Frame = +3
Query: 150 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 329
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162
Query: 330 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RESATQTCYNCNKSGHISRNC 500
+GHIAR+C ++P C C+ +GH+AR+CP+G + ++ + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 501 PD--GTKT---CYVCGKPGHISRECDEAR 572
D G C+ CG GH + EC AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 79.0 bits (186), Expect = 2e-15
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Frame = +3
Query: 156 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 317
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 318 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 479
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 480 GHISRNCPDG 509
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 81.0 bits (191), Expect = 6e-16
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = +3
Query: 252 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 404
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 405 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 557
GH +CP + T+ +C+ C GHIS+NCP+ C VCG H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 558 CDEARN 575
C + N
Sbjct: 194 CPDKFN 199
Score = 58.0 bits (134), Expect = 5e-09
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +3
Query: 225 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 401
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 402 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISREC 560
HIA+ CPE + C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +3
Query: 153 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 314
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 315 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 455
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
Score = 35.5 bits (78), Expect = 0.030
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 459 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRECDEARN*PQPPCLPYN 605
C+ C+ HI++ CP+ + K C C + GH + C E N L YN
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYN 129
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 79.4 bits (187), Expect = 2e-15
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREK---CFKCNRTGHFARDCKEEADRCYRCN 332
CYKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 239 CYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS------G 288
Query: 333 GTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGRESATQT---CYNCNKS 479
+ + S CY C K GH +R+C + G+ +T + CY C K+
Sbjct: 289 NPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKA 348
Query: 480 GHISRNCPDGTKTCYVCGK 536
GH SR+C +T GK
Sbjct: 349 GHWSRDCTSPAQTTNTPGK 367
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 144 SMSSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNRTGHFARDCKEEA 311
S SS CYKC + GH++R+CT Q SG + C+KC + GH++RDC A
Sbjct: 300 SSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPA 359
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Frame = +3
Query: 378 PSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCPDGTKT-----------C 521
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 522 YVCGKPGHISREC 560
+ CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 65.3 bits (152), Expect = 3e-11
Identities = 43/143 (30%), Positives = 55/143 (38%), Gaps = 10/143 (6%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 341
CY C GH + C ++R+ CF C H A+ C + D CY C TG
Sbjct: 168 CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQCSKGHD-CYICKKTG 217
Query: 342 HIARECAQSPDEPS----CYNCNKTGHIARNCP-EGGRESATQT-CYNCNKSGHI----S 491
H A++C S C C GH C E +E CY C GH+
Sbjct: 218 HRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEP 277
Query: 492 RNCPDGTKTCYVCGKPGHISREC 560
N +CY CG+ GH C
Sbjct: 278 GNSLSWAVSCYRCGQLGHSGLAC 300
Score = 63.3 bits (147), Expect = 1e-10
Identities = 51/170 (30%), Positives = 68/170 (40%), Gaps = 52/170 (30%)
Frame = +3
Query: 162 CYKCNRTGHFAREC-------TQGGVVSRDSGFNRQ---------RE-----KCFKCNRT 278
CY C +TGH A++C ++G V R F +E +C+ C
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSF 269
Query: 279 GHFARDCKEEADR------CYRCNGTGHIARECAQSPDEPS------------------C 386
GH C E + CYRC GH C + +E + C
Sbjct: 270 GHLC--CVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASEC 327
Query: 387 YNCNKTGHIARNCPEG-------GRESATQTCYNCNKSGHISRNCPDGTK 515
Y C + GH AR CP GRES T CY CN SGH +R CP+ ++
Sbjct: 328 YRCGEEGHFARECPNSSSISTSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 62.5 bits (145), Expect = 2e-10
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Frame = +3
Query: 135 NSPSMSSSVCYKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGHFA 290
NS S + S CY+C + GH C + S ++ FN R+ +C++C GHFA
Sbjct: 279 NSLSWAVS-CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFA 337
Query: 291 RDC-----------KEEADRCYRCNGTGHIARECAQS 368
R+C +E CYRCNG+GH AREC S
Sbjct: 338 RECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +3
Query: 144 SMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 323
S +S CY+C GHFAREC +S G Q C++CN +GHFAR+C +
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQT-LCYRCNGSGHFARECPNSSQVSK 379
Query: 324 RCNGTGHIARECAQSPDEPS 383
R T + + + E S
Sbjct: 380 RDRETSTTSHKSRKKNKENS 399
Score = 54.0 bits (124), Expect = 8e-08
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 381 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 560
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 561 -DEARN 575
D+ +N
Sbjct: 224 PDKYKN 229
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Frame = +3
Query: 303 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATQTCY 464
+EA+ C RC G GH C CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 465 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 560
C + GH C + +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = +3
Query: 246 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 389
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 390 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCY 524
C + GH C +S + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 50.8 bits (116), Expect = 7e-07
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 341
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 342 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATQTCYNCNKSGHIS 491
EC Q PD S T GH CP+ S + + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 492 RNCPDGTKTCYVCGKPGHISREC 560
+ + CY C GHI+R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYR 326
CY CN GH C + G C++C + GH C D C+
Sbjct: 55 CYVCNSLGHLC--CIEPGHT------QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 327 CNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 491
C GH +C S P++ S C + E RE + GH
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE---------EEEGHFE 157
Query: 492 RNCPDGTKTCY 524
CPD + C+
Sbjct: 158 HQCPDSSSVCF 168
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +3
Query: 150 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 317
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 318 CYRCNGTGHIARECAQS 368
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Frame = +3
Query: 132 LNSPSMSSS-------VCYKCNRTGHFARECTQGGVV 221
LNS S S+S +CY+C GH AR+C V
Sbjct: 180 LNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 54.0 bits (124), Expect = 8e-08
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Frame = +3
Query: 177 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 356
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 357 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP-------DGT 512
+ + C NC + GH CPE G + + C C GH R CP G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 513 KT----CYVCGKPGHISREC 560
T C +CG+ GH SR C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336
Score = 40.7 bits (91), Expect = 8e-04
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 314
C C + GH C + G + D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 315 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 488
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 489 SRNCP 503
R CP
Sbjct: 373 VRTCP 377
Score = 39.9 bits (89), Expect = 0.001
Identities = 39/124 (31%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Frame = +3
Query: 258 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQSPDEPSCYNCNKTGHIAR 419
C C + GH C E ADR +RC G G H R C +S + + H
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVT-KGISTRYHKCG 324
Query: 420 NCPEGGRESAT---QTCYNCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEARN*PQ 584
C E G S T T N + SG S G T C C K GH R C +
Sbjct: 325 ICGERGHNSRTCRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCPSKQVSDS 384
Query: 585 PPCL 596
CL
Sbjct: 385 DSCL 388
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 255 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 371
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +3
Query: 402 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 554
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 555 ECDEARN*PQP 587
C +N P P
Sbjct: 135 NC---KNSPSP 142
Score = 47.6 bits (108), Expect = 7e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 315 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 425
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 369 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 500
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 141 PSMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 302
P S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 94 PPPGSGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 255 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 371
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +3
Query: 402 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 554
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 555 ECDEARN*PQP 587
C +N P P
Sbjct: 94 NC---KNSPSP 101
Score = 47.6 bits (108), Expect = 7e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 315 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 425
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 369 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 500
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 141 PSMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 302
P S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 53 PPPGSGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDGTKT-------CYV 527
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 528 CGKPGH 545
CG H
Sbjct: 92 CGNQDH 97
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +3
Query: 318 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 479
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 480 GH 485
H
Sbjct: 96 DH 97
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +3
Query: 453 QTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 572
+ CY C K GH +R+C T+ TCY C + GH S C R
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 341
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 342 H 344
H
Sbjct: 88 H 88
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 309 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 467
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 369 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 515
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 402 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 554
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 555 EC 560
C
Sbjct: 94 NC 95
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 141 PSMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC 320
P + C+ C GH+AR+CT G + KC++C GH R+CK +
Sbjct: 53 PPPGAGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKL 102
Query: 321 YR 326
R
Sbjct: 103 RR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 309 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 467
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 369 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 515
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 402 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 554
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 555 EC 560
C
Sbjct: 105 NC 106
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 141 PSMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC 320
P + C+ C GH+AR+CT G + KC++C GH R+CK +
Sbjct: 64 PPPGAGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKL 113
Query: 321 YR 326
R
Sbjct: 114 RR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 309 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 467
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 369 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 515
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 402 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 554
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 555 EC 560
C
Sbjct: 135 NC 136
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 141 PSMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC 320
P + C+ C GH+AR+CT G + KC++C GH R+CK +
Sbjct: 94 PPPGAGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKL 143
Query: 321 YR 326
R
Sbjct: 144 RR 145
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +3
Query: 210 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 353
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 354 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 440
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 156 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 329
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 330 NGTGHIAREC 359
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 536
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 537 PGHISREC 560
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGG 215
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.1 bits (77), Expect = 0.040
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 507 GTKTCYVCGKPGHISRECDE 566
G CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 432 GGRESATQTCYNCNKSGHISRNCPDG 509
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 210 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 383
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 384 CYNCNKTGHIARNCPEGG 437
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 318 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 497
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 498 CPDG 509
C G
Sbjct: 195 CTSG 198
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 299
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 381 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 560
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGG 215
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 34.7 bits (76), Expect = 0.052
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 507 GTKTCYVCGKPGHISRECDE 566
G +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 405 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 509
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 456 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 560
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 324 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 503
+ I C + DE N + R E G ++ +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 504 DGTKTCYVCGKPGHISRECDEARN 575
G TCY CG+ HI+ C N
Sbjct: 140 AGWVTCYSCGEKDHITVSCPTLTN 163
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 210 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 314
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.49
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGG 215
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 375 EPSCYNCNKTGHIARNCPEGG 437
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.85
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 279 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 377
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 396 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 560
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 210 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 314
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.49
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGG 215
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 375 EPSCYNCNKTGHIARNCPEGG 437
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.85
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 279 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 377
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 396 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 560
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +3
Query: 225 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 317
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.069
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSG 236
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 507 GTKTCYVCGKPGHISREC 560
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 515
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 207 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 359
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 147 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 251
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 207 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 302
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 219 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 359
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPEG 434
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 519 CYVCGKPGHISRECDEAR 572
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 432 GGRESATQT--CYNCNKSGHISRNCPDG 509
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 147 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 251
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 207 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 302
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 219 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 359
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPEG 434
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 519 CYVCGKPGHISRECDEAR 572
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 432 GGRESATQT--CYNCNKSGHISRNCPDG 509
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 251
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.092
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 255 KCFKCNRTGHFARDCK 302
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.5 bits (68), Expect = 0.49
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 432 GGRESATQTCYNCNKSGHISRNC 500
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 315 RCYRCNGTGHIAREC 359
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGG 437
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 519 CYVCGKPGHISREC 560
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 246 QREKCFKCNRTGHFARDC 299
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 345 IARECAQSP-DEPSCYNCNKTGHIARNCP 428
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 6.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 501 PDGTKTCYVCGKPGHISREC 560
P + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 6.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 162 CYKCNRTGHFAREC 203
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 162 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 251
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 210 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 302
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 435 GRESATQTCYNCNKSGHISRNC 500
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 315 RCYRCNGTGHIAREC 359
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 519 CYVCGKPGHISREC 560
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 503
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 258 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 428
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Frame = +3
Query: 336 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE----------------GGRESATQTCYN 467
+G +A + + C+ C K GH R+C E GRE A+ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 468 CNKSGHISRNCPD 506
C + H + CP+
Sbjct: 648 CFQLSHWAATCPN 660
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +3
Query: 159 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 299
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.1 bits (77), Expect = 0.040
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = +3
Query: 150 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 326
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 327 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT------CYNCNKSGH 485
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 486 ISRNCPDG---TKTCYVCGKPGHISREC 560
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/105 (20%), Positives = 36/105 (34%)
Frame = +3
Query: 246 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 425
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 426 PEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 560
E ++T YN S + CY CG+ GH+S C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 2/117 (1%)
Frame = +3
Query: 162 CYKCNRTGHFARECT--QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 335
CY+C GH + C +S + Q + T + + + + NG
Sbjct: 481 CYECGEKGHLSTACPIKLQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTEN----NG 536
Query: 336 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 506
+ A P N + G + + CY C + GH+S CP+
Sbjct: 537 GSFMDESYATVPISIDVTNGANDASLTSAVSTG--KIKKRNCYECGEKGHLSSACPN 591
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.052
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 252 EKCFKCNRTGHFARDC 299
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.21
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGG 215
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 375 EPSCYNCNKTGHIARNCPEGG 437
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 432 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 569
GGR+S + G G C+ CG+ GH +R+C A
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 312 DRCYRCNGTGHIAREC 359
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 33.5 bits (73), Expect = 0.12
Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Frame = +3
Query: 138 SPSMSSSVCYKCNRTGHFARECTQGGVVSRDS---GFN-RQREKCFKCNRTGH--FARDC 299
S + S+VC C + GH + C SR+S N R E CN G R
Sbjct: 759 SNTRQSNVCIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTA 818
Query: 300 KEEADR---CYRC--NGTGHIARECA---QSPDEPSCYNCNKTGHI-ARNCPEGGRESAT 452
EA+R + C G A E + S + + N +G +R GGR +
Sbjct: 819 NTEANRGRQFFSCPTQGCSFFAWEDSINNSSGNATTGSNSGGSGRRGSRGRGRGGRGGQS 878
Query: 453 QTCYNCNKSGHISRNC-PDGTKTCYVCGKPGHISRECDEARN 575
+ + +S P C+ CG P H + C N
Sbjct: 879 SGGRRGSGTSFVSATGEPVSGIRCFSCGDPSHFANACPNRNN 920
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 405 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 503
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 384 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 509
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +3
Query: 318 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 452
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 390 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 515
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 465 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 569
+ ++SG + G T +C VCG GH+S +C A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 258 CFKCNRTGHFARDCKEEA 311
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.49
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 441 ESATQTCYNCNKSGHISRNCP 503
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 519 CYVCGKPGHISREC 560
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVS 224
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 497
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 315 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 437
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 438 RESATQTCYNCNKSGHISRNCPD 506
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 516 TCYVCGKPGHISRECDEAR 572
+C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 381 SCYNCNKTGHIARNCPE 431
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 371 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 514
G +V+ LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.37
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 246 QREKCFKCNRTGHFARDCK 302
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 345 IARECAQSPDEPS-CYNCNKTGHIARNC 425
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.49
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 426 PEGGRESATQTCYNCNKSGHISRNC 500
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.5 bits (68), Expect = 0.49
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 489 SRNCPDGTKTCYVCGKPGHISREC 560
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.85
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 159 VCYKCNRTGHFAREC 203
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.85
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +3
Query: 258 CFKCNRTGHFARDC--KEEAD 314
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 384 CYNCNKTGHIARNC 425
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 318 CYRCNGTGHIAREC 359
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 479
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 303 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 437
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 375 EPSCYNCNKTGHIARNCPEGGRESATQ 455
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.85
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 456 TCYNCNKSGHISRNCPDGTKTCYV 527
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.65
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +3
Query: 324 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 491
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 492 RNCP 503
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +3
Query: 249 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 359
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.1 bits (67), Expect = 0.65
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +3
Query: 303 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 473
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 474 KSGHISRNCPD----GTKTCYVCGKPGHI 548
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 423 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 569
CP G E A + + N+ IS C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.85
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 291 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 467
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 468 CNKS 479
C S
Sbjct: 181 CKSS 184
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +3
Query: 459 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 560
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 503
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +3
Query: 459 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 560
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 503
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 324 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 437
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 159 VCYKCNRTGHFARECTQGG 215
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 450 TQTCYNCNKSGHISRNCPD 506
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGG 437
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 312 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 485
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 486 ISRNC 500
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 159 VCYKCNRTGHFARECTQGG 215
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 345 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 497
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 381 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK-TCYVCGKPGHISRE 557
S N N + + G + + + +S R+ G K C++CG+ GH +
Sbjct: 114 SVENQNLRKKLMKEKTAAGYKETAEELHVRRRSVSRDRSKSKGEKGACWICGEDGHYKND 173
Query: 558 CDEARN*PQP 587
C +RN +P
Sbjct: 174 C-PSRNSEKP 182
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +3
Query: 351 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 497
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 498 CPDGTKTCYVCG 533
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 450 TQTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 542
T+ C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 303 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 440
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 515
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +3
Query: 255 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 389
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 303 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 440
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 515
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +3
Query: 255 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 389
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 371 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 514
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 371 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 514
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 300 KEEADRCYRCNGTGHIARECAQSP 371
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 258 CFKCNRTGHFARDC 299
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQG 212
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +3
Query: 465 NCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE----ARN*PQPP 590
N S I + CY CG GH+S EC + R P PP
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPP 181
Score = 28.3 bits (60), Expect = 4.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 303 EEADRCYRCNGTGHIARECAQS 368
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 4.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 372 DEPSCYNCNKTGHIARNCPE 431
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 459 CYNCNKSGHISRNCP 503
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 210 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 299
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 300 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 479
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 480 GHIS 491
G ++
Sbjct: 128 GSLT 131
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +3
Query: 177 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 329
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 330 NGTGHIARECA 362
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 300 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 455
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 456 TCYNCNKSGHISRNCP 503
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 300 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 455
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 456 TCYNCNKSGHISRNCP 503
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 210 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 299
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 459 CYNCNKSGHISRNCPDGTKT 518
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 384 CYNCNKTGHIARNCP 428
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 147 MSSSVCYKCNRTGHFAREC 203
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 237 FNRQREKCFKCNRTGHFARDCKEEADR 317
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +3
Query: 351 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 530
R ++ D PSC CN+ G A CP G + C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 531 GKPGHISR 554
GKP +S+
Sbjct: 241 GKPWPLSK 248
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 300 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 479
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 480 GHISRNCP 503
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 300 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 479
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 480 GHISRNCP 503
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +3
Query: 318 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 425
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Frame = +3
Query: 378 PSCYNCNKTGHIARNCPEGGRESAT-----------QTCYNCNKSGHISRNC 500
P C++C GHI C RE CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 495 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 409
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
similar to zinc finger protein GB:AAA75253; some members
of this protein family have a weak CCHC zinc fingers
that is mostly from retroviral gag proteins
(nucleocapsid)
Length = 409
Score = 28.7 bits (61), Expect = 3.4
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Frame = +3
Query: 282 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESAT 452
HFAR C + + GT + EC + E C C GH+A CP+
Sbjct: 159 HFARVCVK-VNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPKRSPGPVV 217
Query: 453 QTCYNCNKSGHISRNCPDGTKTCYVCGK 536
Q + K +S G + CGK
Sbjct: 218 QAGASPRKGNDVSSRGIGGEEIRKECGK 245
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 390 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 497
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 390 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 497
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 390 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 497
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 545
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 545
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 132 LNSP-SMSSSVCYKCNRTGHFAREC 203
+N P + SVCY+C H+A+ C
Sbjct: 267 INKPRGKAKSVCYRCGMDDHWAKTC 291
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 395 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQARPHLARV 559
QQ+ P + +L R A VCD L L +R HL + + H DVLR +A A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +3
Query: 318 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 428
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = -3
Query: 507 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGS 364
R+D G G + C S S P S SCC C+ TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 312 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 482
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 483 HISRNC 500
IS C
Sbjct: 275 EISTPC 280
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = +3
Query: 252 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIARNC 425
+KC N +A+ ++ Y TG+ C + D+P + N +
Sbjct: 71 QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127
Query: 426 PEGGRESATQTCYNCNKSGHISRNC 500
P +TC+ C K GH + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 132 LNSPSMSSSVCYKCNRTGHFARECTQGGV-VSRDS 233
+ S + ++S C KC + GH+ EC V +SR S
Sbjct: 90 VGSSASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 545
C +C++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRNVHSANALSK--RHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +3
Query: 327 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 428
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Frame = +3
Query: 234 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 398
GF R+R C+ C C+ C+ + A +P +P +CY
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596
Query: 399 KTGHIARNCPEGGRESATQT 458
K G N R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,604
Number of Sequences: 28952
Number of extensions: 254588
Number of successful extensions: 1513
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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