Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11g22
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9726| Best HMM Match : PALP (HMM E-Value=1e-19) 65 7e-13
SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05) 53 2e-07
SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026) 50 1e-06
SB_33312| Best HMM Match : PALP (HMM E-Value=8.2e-21) 50 3e-06
SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_32365| Best HMM Match : PALP (HMM E-Value=0.064) 38 0.011
SB_18116| Best HMM Match : PALP (HMM E-Value=0) 38 0.011
SB_6308| Best HMM Match : CDC73 (HMM E-Value=5) 30 2.2
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_50992| Best HMM Match : HpcH_HpaI (HMM E-Value=1e-10) 29 5.2
>SB_9726| Best HMM Match : PALP (HMM E-Value=1e-19)
Length = 337
Score = 65.3 bits (152), Expect(2) = 7e-13
Identities = 40/111 (36%), Positives = 56/111 (50%)
Frame = +1
Query: 346 EQKKNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDM 525
EQK+ GVIAAS GNH AL+YH +L IP VV+P + L+K
Sbjct: 71 EQKRRGVIAASAGNHAQALAYHGNKLKIPVTVVMPENAPLSKE----------------- 113
Query: 526 SAAKLHAMSLGKEKKMIYINGYDHPDVLAXXXXXXXXXXXXLPNVDAVLIP 678
+A+ L +K + YINGYDHP +L+ + +DAV++P
Sbjct: 114 -----YALDLADQKGLAYINGYDHPHILSGQGTVGLEIIDQVYPLDAVIVP 159
Score = 26.2 bits (55), Expect(2) = 7e-13
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 139 DPNNPRKIKYDDILAASRRIVGAVVRTPC 225
D P ++ ++DI AA RI V RT C
Sbjct: 41 DSEKPIEVHFEDICAAEFRIRKGVKRTTC 69
>SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)
Length = 407
Score = 53.2 bits (122), Expect = 2e-07
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Frame = +1
Query: 157 KIKYDDILAASRRIVGAVVRTPCTRAHMSERL-GMDIYFKQEFLQYTGSFKERGVRNALI 333
++K D+ +A RI + TP +H +++ G ++FK E LQ G+FK RG NA++
Sbjct: 95 QVKLADVQSALDRIAPYINSTPVMTSHTLDKMAGRSLFFKCENLQKAGAFKFRGAMNAVL 154
Query: 334 SL---SDEQKKNG-----VIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQ 489
L SD+ + V+ S+GNH ALS + + + +V+P + K +
Sbjct: 155 RLVESSDDPSGSKSQAPCVVTHSSGNHAQALSLAAKLMNLKAHIVMPKNAPHVKKAAVIE 214
Query: 490 LGAKV 504
GA +
Sbjct: 215 YGANI 219
>SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026)
Length = 338
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +1
Query: 343 DEQKKNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGID 522
+EQK GVI S GNHG AL+ +LGIP +V++P + + KV C + A G +
Sbjct: 162 EEQKGRGVITTSAGNHGLALAQQGDELGIPVMVLLPENVSPLKVKLCNRYNATTKLAGRN 221
Query: 523 MSAAKLHAMSLGKEK 567
+ +HA K K
Sbjct: 222 ATEV-IHARYNAKTK 235
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 175 ILAASRRIVGAVVRTPCTR-AHMSERLGMDIYFKQEFLQYTG 297
I A+ RI + +T C + A +E D++ K+E+LQ TG
Sbjct: 19 ITGAAYRIRNGIEKTACEKLAPFTEIEDYDVFVKREYLQPTG 60
>SB_33312| Best HMM Match : PALP (HMM E-Value=8.2e-21)
Length = 449
Score = 49.6 bits (113), Expect = 3e-06
Identities = 28/74 (37%), Positives = 39/74 (52%)
Frame = +1
Query: 346 EQKKNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDM 525
EQK GVI S GNHG AL+ +LGIP +V++P + + KV C + A G +
Sbjct: 1 EQKGRGVITTSAGNHGLALAQQGDELGIPVMVLLPENVSPLKVKLCNRYNATTKLAGRNA 60
Query: 526 SAAKLHAMSLGKEK 567
+ +HA K K
Sbjct: 61 TEV-IHARYNAKTK 73
>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +1
Query: 250 LGMDIYFKQEFLQYTGSFKER-GVRNALISLSDEQKKNG--VIAASTGNHGAALSYHSTQ 420
L ++ K EF GS K+R G+R + + + K G +I ++GN G L+ +
Sbjct: 25 LKCELLAKCEFFNAGGSVKDRIGLRMIEEAEREGRLKPGDTLIEPTSGNTGIGLALAAAV 84
Query: 421 LGIPCIVVVPIHTALNKVNKCEQLGAKVFK 510
G CI+V+P + KV+ LGA++ +
Sbjct: 85 KGYRCIIVMPEKMSNEKVDVLRALGAEIVR 114
>SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)
Length = 129
Score = 37.5 bits (83), Expect = 0.011
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 250 LGMDIYFKQEFLQYTGSFKER-GVRNALISLSDEQKKNG--VIAASTGNHGAALSYHSTQ 420
L ++ K EF+ GS K+R GVR + D K G +I ++GN G AL+ S
Sbjct: 8 LKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLIEPTSGNTGIALALASAV 67
Query: 421 LGIPCIVVVPIHTALNKVNKCEQLG 495
G C++V+ + +K + + LG
Sbjct: 68 KGYRCVIVMSEKMSSDKADTQKALG 92
>SB_18116| Best HMM Match : PALP (HMM E-Value=0)
Length = 470
Score = 37.5 bits (83), Expect = 0.011
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 250 LGMDIYFKQEFLQYTGSFKER-GVRNALISLSDEQKKNG--VIAASTGNHGAALSYHSTQ 420
L ++ K EF+ GS K+R GVR + D K G +I ++GN G AL+ S
Sbjct: 8 LKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLIEPTSGNTGIALALASAV 67
Query: 421 LGIPCIVVVPIHTALNKVNKCEQLG 495
G C++V+ + +K + + LG
Sbjct: 68 KGYRCVIVMSEKMSSDKADTQKALG 92
>SB_6308| Best HMM Match : CDC73 (HMM E-Value=5)
Length = 388
Score = 29.9 bits (64), Expect = 2.2
Identities = 29/109 (26%), Positives = 43/109 (39%)
Frame = +1
Query: 247 RLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNGVIAASTGNHGAALSYHSTQLG 426
RL DI ++ +GS + R +AL +L+ + + G LSY G
Sbjct: 105 RLAADIAKGVSHVKNSGSNENRAAFSALKNLAFGENVKKCVTL-----GVFLSYKK---G 156
Query: 427 IPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDMSAAKLHAMSLGKEKKM 573
P P H L +V K + G KV + I HA + +E M
Sbjct: 157 FPECEQEPQHAGLGRVPKSQYNGYKVIRCAIAADVCHFHAEASSRENVM 205
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 279 IFTVYWKFQRTWSPKCADIV 338
+F++ W+ TW P+C DIV
Sbjct: 1458 VFSLAWRHDVTWYPRCHDIV 1477
>SB_50992| Best HMM Match : HpcH_HpaI (HMM E-Value=1e-10)
Length = 679
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 AALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVF 507
A+LS +G +P+HT +NKVN +Q+G +
Sbjct: 562 ASLSNTGYDIGNVLYEELPVHTNINKVNPGDQIGTLTY 599
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,244,162
Number of Sequences: 59808
Number of extensions: 474352
Number of successful extensions: 1038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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