Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g20
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12260.1 68416.m01531 complex 1 family protein / LVR family p...    58   2e-09
At2g47220.1 68415.m05897 3' exoribonuclease family domain 1 prot...    29   1.6  
At1g13350.1 68414.m01550 protein kinase family protein contains ...    28   3.7  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    27   5.0  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    27   5.0  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    27   6.5  
At5g38565.1 68418.m04663 F-box family protein contains F-box dom...    27   8.7  
At2g03590.1 68415.m00319 expressed protein similar to SP|Q41706 ...    27   8.7  

>At3g12260.1 68416.m01531 complex 1 family protein / LVR family
           protein contains Pfam PF05347: Complex 1 protein (LYR
           family)
          Length = 133

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = +2

Query: 95  PVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPK--SEAQCREKLKELFIKNKHVTDI 268
           P  S++  EAR RV   ++A  R IP I+  Y++    + +Q R  +      N H+TD 
Sbjct: 13  PPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIRNNAHITDP 72

Query: 269 RVIDMLVIKGQMELKESVNIWKQKGHIMAYF 361
           +VID+L+ KG  EL + V+  KQ+ HI+  +
Sbjct: 73  KVIDLLIFKGMEELTDIVDHAKQRHHIIGQY 103


>At2g47220.1 68415.m05897 3' exoribonuclease family domain 1
           protein-related similar to  polynucleotide phosphorylase
           [Pisum sativum] GI:2286200, polyribonucleotide
           phophorylase [Spinacia oleracea] GI:1924972; contains
           Pfam profiles PF05266: Protein of unknown function
           (DUF724), weak hit to PF01138: 3' exoribonuclease
           family, domain 1
          Length = 469

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 245 KNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSG 415
           K+  VT + +     I GQ ELK  +N WK  G +++     +  K    +S  FSG
Sbjct: 100 KDHEVTFLCLPAASYITGQEELKACLNDWKSNGLVVSGLVRDQREKLIQEVSSTFSG 156


>At1g13350.1 68414.m01550 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069 (likely that this
           cDNA contains a single unspliced intron. Putative intron
           removed in this gene model.)
          Length = 761

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = +2

Query: 125 RNRVLSLYKAWYRQIPYIVKDY--DIPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKG 298
           RN +  ++++ +  +  IVK Y  +I    +  R    +LFI  KH+ +  V+   +   
Sbjct: 518 RNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPD 577

Query: 299 QMELKESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSGNE 421
            M + E  N  K      A F  T E  P   +S+F+   E
Sbjct: 578 NMLVNEGRNTLKLCDFGSAMFAGTNEVTP-YLVSRFYRAPE 617


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 143 LYKAWYRQIPYIVKDYDIPKSEAQCR 220
           L KAW+R++P  V D   P+   QC+
Sbjct: 234 LIKAWFRELPTSVLDSLSPEQVMQCQ 259


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 296 GQMEL-KESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSGNE 421
           G+M++  E + +WKQ+GH +  F  T++    + L  F   NE
Sbjct: 727 GKMKVVAEVLKVWKQQGHRVLLFSQTQQ--MLDILESFLVANE 767


>At3g25840.1 68416.m03219 protein kinase family protein contains Pfam
            profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
 Frame = +2

Query: 125  RNRVLSLYKAWYRQIPYIVKDY--DIPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKG 298
            RN +  ++++ +  +  ++K +  +I    +  R   K+LFI  KH+ +  V+   +   
Sbjct: 693  RNHLCLVFESLHLNLREVLKKFGRNIGLQLSAVRAYSKQLFIALKHLKNCGVLHCDIKPD 752

Query: 299  QMELKESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSGNE*FIYLLCTY 448
             M + E  N+ K      A F    E  P   +S+F+   E  I L  TY
Sbjct: 753  NMLVNEGKNVLKLCDFGNAMFAGKNEVTP-YLVSRFYRSPE--IILGLTY 799


>At5g38565.1 68418.m04663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 415

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 218 REKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQ 337
           REK K L    K   ++RV+++  ++G + L   V+ W Q
Sbjct: 227 REKSKILGQLLKDSPNLRVLNIFKVQGHVTLSTGVDCWNQ 266


>At2g03590.1 68415.m00319 expressed protein similar to SP|Q41706 A3
           protein (unknown function) {Vigna unguiculata}
          Length = 390

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 411 EKNFERKFFGLGSSVGLK*AIMCPFCFHMFTDSFN 307
           EK    K FG  + +GL        CF +F+ +FN
Sbjct: 209 EKQRAIKVFGKSTIIGLVITFFAGICFSLFSPAFN 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,239,326
Number of Sequences: 28952
Number of extensions: 204019
Number of successful extensions: 570
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)