Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g19
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0215 - 1634141-1634144,1634467-1634510,1635639-1635668,163...    29   2.0  
11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168...    29   2.0  
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864...    28   3.5  
05_06_0049 + 25182075-25182332,25182624-25182882,25182986-251832...    28   4.7  
11_04_0378 + 16980735-16980938,16981463-16981720                       27   6.2  
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392...    27   6.2  

>12_01_0215 -
           1634141-1634144,1634467-1634510,1635639-1635668,
           1635784-1635891,1635975-1636060,1636779-1636866,
           1638135-1638253,1638525-1638600,1638820-1638882,
           1639536-1639592,1640016-1640056,1640642-1640738,
           1641636-1641692
          Length = 289

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 287 EEEQGFGGWLRSTNGLETMKLFVIANSIVMLTTLAYPHMQNIIGIVS 427
           E ++ FGG   S+  +  + L +   SI++  T  YPH+  ++GI++
Sbjct: 177 ESDKQFGGLNFSSEDVGQV-LAITGASILIYQTFIYPHIVKVLGIIN 222


>11_01_0214 -
           1682731-1682744,1683597-1683640,1684284-1684372,
           1684461-1684505,1685044-1685073,1685189-1685296,
           1685380-1685465,1686180-1686267,1687494-1687694,
           1687885-1687960,1688040-1688089,1688180-1688242,
           1688322-1688398,1688893-1688953,1689377-1689417,
           1690005-1690086
          Length = 384

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 287 EEEQGFGGWLRSTNGLETMKLFVIANSIVMLTTLAYPHMQNIIGIVS 427
           E ++ FGG   S+  +  + L +   SI++  T  YPH+  ++GI++
Sbjct: 224 ESDKQFGGLNFSSEDVGQV-LAITGASILIYQTFIYPHIVKVLGIIN 269


>07_03_0959 -
           22885750-22886001,22886073-22886195,22886343-22886429,
           22886504-22886555,22886701-22886825,22887002-22887213,
           22887317-22887518,22887928-22888032,22889643-22889704,
           22889998-22890187,22890260-22890355,22890442-22890544,
           22891448-22891551,22893284-22893370,22894033-22894118,
           22894397-22894489,22895615-22895777,22895899-22896011,
           22896113-22896235,22897393-22897444,22897843-22897886,
           22897975-22898048,22898133-22898224,22899374-22899441,
           22900817-22900892,22900952-22901215
          Length = 1015

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 350 FVIANSIVMLTTLAYPHMQNIIGIV 424
           F   N ++ LT + Y HM++IIG++
Sbjct: 373 FSFFNVVIQLTDVGYEHMEDIIGLL 397


>05_06_0049 +
           25182075-25182332,25182624-25182882,25182986-25183204,
           25183890-25184032,25184600-25184899
          Length = 392

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +2

Query: 83  YCSFSSLHRHSRELR*YPAAMFRWSQKTQSQTMTRNKHIKGSHKGSAIKVLDKSLETVDK 262
           Y   +  H+ SR L    A +F    +   + +++   +  +  G A+K+L K  E  D+
Sbjct: 177 YVEVAFYHKPSRTLLVTDAVIF--VPRQPPECISKESLLASAKNGLAVKILSKGKEVPDE 234

Query: 263 PTNSDCLDEEEQGFGGWLR 319
           P   + L+ ++    GW R
Sbjct: 235 PVVDNKLNRQK----GWER 249


>11_04_0378 + 16980735-16980938,16981463-16981720
          Length = 153

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +2

Query: 281 LDEEEQG--FGGWLRSTNGLET 340
           L  EE+G  +GGW+R  +GLET
Sbjct: 126 LTREERGLIYGGWVRPDDGLET 147


>07_03_1562 -
           27738369-27738568,27738767-27738962,27739079-27739230,
           27739775-27739832,27739923-27740038,27740117-27740237,
           27740348-27740635,27740817-27740987,27741091-27741741,
           27742515-27742676,27742764-27743904,27743992-27744152,
           27744239-27744564,27745678-27745825
          Length = 1296

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 221 AIKVLDKSLETVDKPTNSDCLDEEEQGFGGWLRSTNGLETMKLFVIANSIVMLTTLAY 394
           A +++ KSL +V     +DC+  E +   G + S+     +  F+   S + L  L Y
Sbjct: 772 AAQIVKKSLNSVFGVLGTDCMSNENETQNGSMLSSTPATNLGRFLFIISHIALNHLVY 829


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,992,654
Number of Sequences: 37544
Number of extensions: 247862
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)