Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g19
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             27   6.4  
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 95  SSLHRHSRELR*YPAAMFRWSQKTQSQTMTRNKHIKGSHKGSAIK 229
           SSL RH R +    A      +K  SQ     +H+KG HK  A+K
Sbjct: 677 SSLSRHIRTVHQDKAFKCERCEKKFSQPYHLTRHVKGCHKEKAMK 721


>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 264

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 322 GSEPTSKTLFLFIQTIGVCWLVNSF 248
           GSE T +  FLF   + VC  +NSF
Sbjct: 56  GSEMTQRDAFLFAFGVAVCSFLNSF 80


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 188  NKHIKGSHKGSAIKVLDKSLETVDKPTNSDCLDEEEQGFGGWLRSTNGLETMKL--FVIA 361
            ++H+ G ++   I  LD S  + D     + ++EE++   GW ++ + ++   L  F+I+
Sbjct: 954  SEHVSGENRHD-IPDLDDSTGSTDVGPTEEAVEEEKEEEVGWPKAGDTVDQQMLDHFMIS 1012

Query: 362  NSIVMLTTLAY 394
              +    TL Y
Sbjct: 1013 QILEQNLTLFY 1023


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,220,679
Number of Sequences: 59808
Number of extensions: 291534
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)