Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g19
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 484 YRLIRVIYSIYRVWSIH*IGYNPDDILH 401
           YR+ + I   Y  + +H   YN D+I++
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKDEIIY 446


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 484 YRLIRVIYSIYRVWSIH*IGYNPDDILH 401
           YR+ + I   Y  + +H   YN D+I++
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKDEIIY 446


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 363 TVL*CSRLWPILTCKISSGLYPI*CMDQTLYIE 461
           TV   +R+  I+ C++   LYP+      +YIE
Sbjct: 103 TVKYSARMHAIIACQMEFQLYPMDIQICPIYIE 135


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 313 PTSKTLFLFIQTIGVC 266
           PT + + L  QTIG C
Sbjct: 205 PTGREVALIEQTIGTC 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,531
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)