Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g17
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    31   0.17 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   2.1  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.8  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.9  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   8.5  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   8.5  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 632 TRSVENLAALYHHQPTLVHLPVSITEHYFRL-SSSTSYRSAFVNHRAVWSGD 480
           T +  N   +YH    +  LP++IT+ Y+ L SSST+ R+   + +   +GD
Sbjct: 557 TFAERNFQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFSAKISKNGD 608


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 243 TVDYYKVEFRRPIRQIRHDTLSLTRYKSVLGTYFRKINPHRVQAKWQW---TRHICHRSE 413
           T+++ + + +R  R   +   +   Y++    +F+ ++ H V   W W    R +C    
Sbjct: 166 TINFVQQKDKRQKRSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKG 225

Query: 414 YH 419
           Y+
Sbjct: 226 YY 227


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 PTVDYYKVEFRRPIRQIRHDTLSLTRYKSVL 332
           PT+D+    FR   + +  D LSL+ Y S++
Sbjct: 254 PTIDFLSSHFRVDDKLVAKDLLSLSAYSSLI 284


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 668 SDGTFGPSTSQDTRSVENLAALYHHQPTLVHLPVSITEH 552
           +D +F  ++S DT S+      + H P   +LP+    H
Sbjct: 141 ADRSFSSNSSSDTNSILYAGPTFTHSPAASNLPIPTFLH 179


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 106 NYNEAVVFLNSPSSPTEPNPFKR*PSNRLWAQNKFKSDRPVL 231
           N +  +++LN+  +P +   ++  P N  W ++KF SD PVL
Sbjct: 359 NNHILLLYLNALDAPKQLLCYEADPKNLYWDKDKF-SDIPVL 399


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 612 CCSLSSPAHTCSPPSFYN*ALFSALL 535
           CCS  S A T SP S+Y  +L + LL
Sbjct: 441 CCSFPSTASTSSPFSYYPESLPTPLL 466


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 370 KLNGNGLDIYVIDPNITRTNEFFSGDRFCGTRPMLVASPDQTAR 501
           +++GN +D+Y+ +  I+   +  S DR    +  +VA  D + +
Sbjct: 847 RISGNSIDVYISEYGISNRVDLSSDDRI---KSFIVAPDDSSVK 887


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 345 RKINPHRVQAKWQWTRHICHRSEYH*NKRVLQRRPLLWHTPNAC 476
           +K + + + + + WTR + HR     N+R+++    L H    C
Sbjct: 333 KKTSTNSIASIFAWTRGLAHRGRLDGNERLVKFANALEHACVRC 376


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 575 LPVSITEHYFRLSSSTSYRS--AFVNHRAVWSGDATSIGRVPQKRS 444
           +P S+T+H      S   +   AF+ H A W    T    VP K+S
Sbjct: 752 IPYSLTDHIHEREISYRLKQPVAFIPHVAQWFQGITLTINVPLKKS 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,762
Number of Sequences: 5004
Number of extensions: 72245
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)