Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g17
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family pr...    28   5.6  
At1g06950.1 68414.m00738 chloroplast inner envelope protein-rela...    28   5.6  

>At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 260

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = -3

Query: 659 TFGPSTSQDTRSVENLAALYHHQPTLVHLPVSITEHYFRLSSSTSY 522
           TF PS++    S+E+L  L+HHQ  L+H P +  +     SS++S+
Sbjct: 39  TFHPSST----SLESLF-LHHHQQQLLHFPGNSPDSSNNFSSTSSF 79


>At1g06950.1 68414.m00738 chloroplast inner envelope protein-related
           similar to chloroplast inner envelope protein GI:1495767
           from [Pisum sativum]
          Length = 1016

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 546 SALLIHFLPVSFRKSSR--CLVRRRHKHWACATKAVSAEELVCSSDIR 409
           S LL HFLP    + S+  CL RRR++     + A S+++L  S+  +
Sbjct: 19  SPLLSHFLPTLPHRFSKSECLSRRRYRVSFPRSSAASSDQLSVSTQAK 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,532,293
Number of Sequences: 28952
Number of extensions: 370718
Number of successful extensions: 890
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)