Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g16
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42571| Best HMM Match : TerB (HMM E-Value=1.9)                      29   4.1  
SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 29   5.4  
SB_4814| Best HMM Match : NTP_transf_2 (HMM E-Value=0.6)               29   5.4  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   7.2  
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   9.5  

>SB_42571| Best HMM Match : TerB (HMM E-Value=1.9)
          Length = 305

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 242 IIDTGEGMPAYTPRGIRKSALNSQLSDRVHDVSWPYLRRFLILKKTYKQRFNEERLERID 421
           I+ T     ++      KSA++++  +R          +FL  KK  K +F E  L+  +
Sbjct: 188 IVPTSHSSKSHRSSNSSKSAISARARERARAAELITKAKFLKQKKAIKNKFEELELQE-E 246

Query: 422 RMIEAANATCYSKLANCV 475
             I  A    Y+++A+ V
Sbjct: 247 IFIAQAREKSYAEIADQV 264


>SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 242 IIDTGEGMPAYTPRGIRKSALNSQLSDRVHDVSWPYLRRFLILKKTYKQRFNEERLERID 421
           I+ T     ++      KSA++++  +R          +FL  KK  K +F E  L+  +
Sbjct: 25  IVPTSHSSKSHRSSNSSKSAISARARERARAAELITKAKFLKQKKAIKNKFEELELQE-E 83

Query: 422 RMIEAANATCYSKLANCV 475
             I  A    Y+++A+ V
Sbjct: 84  IFIAQAREKSYAEIADQV 101


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 107 PPPFITLRTADFTTEMGKPKFDPPTNTFP--YKIAKRLNILSVPRKYIIDTGEGMPAYTP 280
           PPP   + T    T+  +P   PPT   P    I + L   + PRK I D    +P  TP
Sbjct: 44  PPPAPPIPTP--RTKKAEPIGAPPTKLRPPTVLIVRPLKTGTTPRKNIPDQERSLPIPTP 101

Query: 281 R 283
           R
Sbjct: 102 R 102


>SB_4814| Best HMM Match : NTP_transf_2 (HMM E-Value=0.6)
          Length = 426

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = +2

Query: 107 PPPFITLRTADFTTEMGKPKFDPPTNTFPYKIAKRLNI-LSV-PRKYIIDTG-EGMPAYT 277
           P P   L  ++ + E GKP   PP+    +K+ K L++ LS  P  Y ++ G +   +Y+
Sbjct: 6   PGPSSELNQSNHSIESGKP--GPPSELNQFKLTKSLDVGLSTSPTPYKVNKGNDSDSSYS 63

Query: 278 PRGIRKSALNSQLSDRVHDVS 340
             G  +S    +++ R+ D+S
Sbjct: 64  DSGDERSP--PKVATRILDLS 82


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 215 NILSVPRKYIIDTGEGMPAYTPRGIRKSALNSQLSDRVHDVSWPYLRRFLILKKT-YKQR 391
           ++ SV + +I+ + + +P Y P G    A +   S  + D S  Y    LIL+    K  
Sbjct: 713 SVPSVKQAWIVSSHKSLPEYVPHGSTGGASSIPCSPELTDAS-TYSNSSLILRAPGVKHT 771

Query: 392 FNEERLER 415
           ++E+  ER
Sbjct: 772 WSEDSHER 779


>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 280

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 120 IKGGGW*KY-IELHVDFYFYIGVKVSSFCRYG 28
           ++GG W  Y ++ +++ ++Y GV V  +C+ G
Sbjct: 156 VRGGWWFNYCVKSNLNAFYYEGVIVKRYCKTG 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,238,524
Number of Sequences: 59808
Number of extensions: 523953
Number of successful extensions: 1240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)