Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g16
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.77 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 755 RTSVLLVPPSQGFCTTSPVK 696
           + +V+L PP + FC   P+K
Sbjct: 124 KMTVILTPPGRFFCEVRPIK 143


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 682 LEHWSRRYLHEPW 644
           L+++  RY+HEPW
Sbjct: 453 LKNFPTRYIHEPW 465


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 116 FITLRTADFTTEMGKPKFDPPTNTFPY 196
           FIT+   DF T   K K D P    P+
Sbjct: 383 FITMFDLDFLTNACKKKDDKPKRRLPH 409


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 211 FEHTECP*EVH 243
           F H+ CP E+H
Sbjct: 475 FSHSRCPPEIH 485


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 211 FEHTECP*EVH 243
           F H+ CP E+H
Sbjct: 475 FSHSRCPPEIH 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,574
Number of Sequences: 438
Number of extensions: 5087
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)