Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g16
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61910.3 68418.m07772 expressed protein                             31   1.1  
At5g61910.2 68418.m07771 expressed protein                             31   1.1  
At5g61910.1 68418.m07770 expressed protein                             31   1.1  
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea...    30   1.9  
At1g47210.2 68414.m05226 cyclin family protein similar to A-type...    28   5.9  
At1g47210.1 68414.m05225 cyclin family protein similar to A-type...    28   5.9  

>At5g61910.3 68418.m07772 expressed protein
          Length = 742

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +2

Query: 11  TSNCQKPYLQNDETLTPI*K*KSTCNSIYFHHPPPFITLRTADFTTEMGKPKFDPPTNTF 190
           TS  Q  Y + D+  TP  +  S  N  Y+  P     LR     +    P+ +PP ++ 
Sbjct: 255 TSLLQHSYFRQDDYTTPPRESLSNLNQPYY--PTEARQLRLLGDPSRSDSPRSEPPRSSI 312

Query: 191 PYKIAKRLNILSVPRKY 241
                K L ILS  R+Y
Sbjct: 313 QDPQLKYLTILSNIRRY 329


>At5g61910.2 68418.m07771 expressed protein
          Length = 738

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +2

Query: 11  TSNCQKPYLQNDETLTPI*K*KSTCNSIYFHHPPPFITLRTADFTTEMGKPKFDPPTNTF 190
           TS  Q  Y + D+  TP  +  S  N  Y+  P     LR     +    P+ +PP ++ 
Sbjct: 251 TSLLQHSYFRQDDYTTPPRESLSNLNQPYY--PTEARQLRLLGDPSRSDSPRSEPPRSSI 308

Query: 191 PYKIAKRLNILSVPRKY 241
                K L ILS  R+Y
Sbjct: 309 QDPQLKYLTILSNIRRY 325


>At5g61910.1 68418.m07770 expressed protein
          Length = 738

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +2

Query: 11  TSNCQKPYLQNDETLTPI*K*KSTCNSIYFHHPPPFITLRTADFTTEMGKPKFDPPTNTF 190
           TS  Q  Y + D+  TP  +  S  N  Y+  P     LR     +    P+ +PP ++ 
Sbjct: 251 TSLLQHSYFRQDDYTTPPRESLSNLNQPYY--PTEARQLRLLGDPSRSDSPRSEPPRSSI 308

Query: 191 PYKIAKRLNILSVPRKY 241
                K L ILS  R+Y
Sbjct: 309 QDPQLKYLTILSNIRRY 325


>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
           identical to cohesion family protein SYN3 [Arabidopsis
           thaliana] GI:12006362; supporting cDNA
           gi|12006361|gb|AF281155.1|AF281155
          Length = 693

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
 Frame = +2

Query: 92  IYFHHPPPFIT-LRTADFTTEMG-----KPKFDPPTNTFPYKIAKRLNILSVP------- 232
           +Y   PPP  +  RT DFTT+ G       + +P T+T P  +  + N+   P       
Sbjct: 526 VYMPSPPPRSSPFRTDDFTTQSGNWETESYRTEPSTSTVPEDLPGQRNLGLSPVSERTDE 585

Query: 233 RKYIIDTGEGMPAYTPRGIRKSALNSQ 313
             Y ++ G   P  TP     +AL  +
Sbjct: 586 ELYFLEVGGNSPVGTPASQDSAALTGR 612


>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
           cyclin [Catharanthus roseus] GI:2190259; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 372

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 578 PKRDFRPPPAKRGQSKPLEAL-LPRLMQISSR 670
           PKR+ +PPPAK+ +S P+  + L     I SR
Sbjct: 61  PKRNLKPPPAKQIKSAPVAIIDLESKSDIDSR 92


>At1g47210.1 68414.m05225 cyclin family protein similar to A-type
           cyclin [Catharanthus roseus] GI:2190259; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 192

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 578 PKRDFRPPPAKRGQSKPLEAL-LPRLMQISSR 670
           PKR+ +PPPAK+ +S P+  + L     I SR
Sbjct: 61  PKRNLKPPPAKQIKSAPVAIIDLESKSDIDSR 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,351
Number of Sequences: 28952
Number of extensions: 366596
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)