Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g15
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0442 + 3495333-3496484                                           30   2.0  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    29   3.4  
07_01_0121 - 924306-925838                                             28   7.9  

>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 93  VTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPR----CSQGSVKDTPKYSE 257
           VTR  R   A     A A   PP +P+S KT+ + K  +P+    C      +TP++ E
Sbjct: 203 VTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCVHCGSTETPQWRE 261


>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
            10839965-10841686,10841776-10842173,10842264-10842318,
            10842989-10843048,10843444-10843540,10844885-10844955,
            10845029-10845109,10846054-10846124,10847951-10848119,
            10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 555  IRFNIYSSKTRIVFLNSTKRQCK*SPCTLHFIYEKKKNVA*KYSKLFLIEKHTPRSY 385
            +R  ++ S ++ V L ST+ + + S      + EK+K V+ KYS L L+E      Y
Sbjct: 1001 VRDVMWKSNSKTVGLRSTRNKRESSNFPGTHLLEKRKQVSMKYSWLMLLEHEDSYRY 1057


>07_01_0121 - 924306-925838
          Length = 510

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -2

Query: 567 VLGYIRFNIYSSKTRIVFLNSTKRQCK*SPCTLHFIYEK---KKNVA*KYSKLFLIEKHT 397
           VLG ++  +   +  ++FLN   R C+  P ++H + +K    + +  ++   FL+++ T
Sbjct: 128 VLGRLQVTLEDMREFVIFLNFCPRLCR-QPYSMHLLIDKCLFGRQMEMEHIMNFLLKEDT 186

Query: 396 P 394
           P
Sbjct: 187 P 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,016
Number of Sequences: 37544
Number of extensions: 340790
Number of successful extensions: 832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)