Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g13
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.91 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   2.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    24   6.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   8.5  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 134  GLSEWIFLHDLHKCQW-LPDEKQITNSYPIISS 229
            G + W+ + D H+  W LP + +  + YP+  S
Sbjct: 1663 GPANWVDIDDYHEADWLLPQQNEKCSIYPLAFS 1695


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 193 KTNHKFVSNYQQCSLKVISSKHS*YEI 273
           K N  F  NY+   L  I S H+ Y I
Sbjct: 853 KKNQVFFGNYEDSKLSFIGSNHTRYRI 879


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 283 LQVKFRIKNALN*SLSKSTADNWIRICDLF 194
           +  ++R  N L  ++++   D W  +CD F
Sbjct: 196 MDAEYRETNELLLTVTREWIDRWTEVCDAF 225


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 323 QLVFLSLPAVTFTTT 279
           QL++L  PAVTF+T+
Sbjct: 392 QLIYLPKPAVTFSTS 406


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -2

Query: 292 RSLLQVKFRIKNALN*SLSKSTADNWIRICDLFFVWKPL 176
           R+ ++ KF++K     ++S  T  NW++ CD+ +++ PL
Sbjct: 337 RTWMKHKFKLK-----TISPETL-NWLKECDVTWLYGPL 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,127
Number of Sequences: 5004
Number of extensions: 22327
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)