Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g13
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z92973-2|CAB07492.2|  964|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AL032636-1|CAA21605.1|  343|Caenorhabditis elegans Hypothetical ...    26   9.5  

>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 103 TKFYYLCCKKRSFRVDFSP*FT*MSMASRRKTNHKFVSNYQQCSLKVIS 249
           TK YY  C+K ++  D+SP    ++  SR     +  +N  QCS+ + S
Sbjct: 376 TKKYYFVCQKHAYSADYSPSDPEINHLSRGIWKIRVRAN-GQCSISIRS 423


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 107 NFIIYVVKSGLSEWIFLHDLHKCQWLPDEKQITNSY 214
           N+ I +V  G  +W  L DLH    LP    +  SY
Sbjct: 544 NYRIQIVHEGSGKWFELEDLHVKDLLPQMIVLAESY 579


>Z92973-2|CAB07492.2|  964|Caenorhabditis elegans Hypothetical
           protein Y6G8.2 protein.
          Length = 964

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 146 WIFLHDLHKCQWLPDEKQITNSYPIISSAL*K*LVQSILNTKFNL 280
           W F H++H    L  E  ITN Y      +   +   I+N+ FNL
Sbjct: 574 WYFPHEVHTSYDLRIEYCITNDYTFQFGFVEAEVKPQIVNSDFNL 618


>AL032636-1|CAA21605.1|  343|Caenorhabditis elegans Hypothetical
           protein Y40B1B.3 protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 93  LCLYKILLFML*KAVFQSGFFSMIYINVNGFQTKNKSQIRIQLSAVL 233
           LC  + +L      V + G+     +NV  F+T  +S++  Q+S ++
Sbjct: 297 LCFNEHILKQTTGIVIRCGYEKKAMVNVKLFETPTESEVLFQMSLIV 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,746,173
Number of Sequences: 27780
Number of extensions: 120605
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)