Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g13
         (365 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28030.1 68417.m04021 GCN5-related N-acetyltransferase (GNAT)...    26   6.7  
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    26   6.7  
At4g09550.1 68417.m01569 expressed protein                             26   8.8  

>At4g28030.1 68417.m04021 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 274

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +2

Query: 161 DLHKCQWLPDE 193
           DL++C+WLPDE
Sbjct: 158 DLNQCRWLPDE 168


>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 52  FKLNSDPSFC**CNFVFTKFYYLCCKKRSFRVDFSP*FT*MSMASRRKTNHKFVSNY 222
           F L  D   C  C+  ++    LCC +  FR+DF        + ++R  +H    +Y
Sbjct: 517 FSLEGDTK-CSACDITYSARDMLCCDECEFRLDFRCATLPRKVMNQRYDDHPLYLSY 572


>At4g09550.1 68417.m01569 expressed protein
          Length = 71

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 292 RSLLQVKFRIKNALN*SLSKSTADNWIRICDL 197
           R  L++ FR+ N L+  L + T    I +CDL
Sbjct: 10  RESLELVFRMSNILDTGLDRHTLSVLIALCDL 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,150,083
Number of Sequences: 28952
Number of extensions: 103937
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)