Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g12
         (636 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8TCT6 Cluster: Signal peptide peptidase-like 3; n=44; ...    84   3e-15
UniRef50_UPI0000F2C9AB Cluster: PREDICTED: hypothetical protein;...    33   5.8  

>UniRef50_Q8TCT6 Cluster: Signal peptide peptidase-like 3; n=44;
           Eumetazoa|Rep: Signal peptide peptidase-like 3 - Homo
           sapiens (Human)
          Length = 385

 Score = 83.8 bits (198), Expect = 3e-15
 Identities = 49/125 (39%), Positives = 64/125 (51%)
 Frame = +2

Query: 254 MEYQEYKWAYSIMDSSKVSACLISMLLIVYGSFRSLNMXXXXXXXXXXXXXXSLLGGKPA 433
           M  Q Y WAYS++DSS+VS  LIS+LLIVYGSFRSLNM              S   G   
Sbjct: 1   MAEQTYSWAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQDKEKDSNSSS---GSFN 57

Query: 434 TPSSSNNNVQTLNTMQALCFPLGSSVALLIMFFFFDSMQXXXXXXXXXXXXXXXXXXXXP 613
                    Q +++ +A   P+G+ V+LL+MFFFFDS+Q                    P
Sbjct: 58  GEQEPIIGFQPMDSTRARFLPMGACVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLP 117

Query: 614 LCQYV 628
           +CQY+
Sbjct: 118 MCQYL 122


>UniRef50_UPI0000F2C9AB Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 314

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +1

Query: 361 EHGEGGSRKS*ERKRGVTARRETRNTFELQQQRADIEHDASAVLPPGLVR 510
           + G GG+ +   R RG   RR+ R T EL ++RA    D SA  P G  R
Sbjct: 17  QRGSGGAPRRAPRARGSPVRRQGRGTRELGRRRA---RDGSATPPEGAPR 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,733,548
Number of Sequences: 1657284
Number of extensions: 9311512
Number of successful extensions: 23088
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23077
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)