Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g12
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601     34   0.11 
05_03_0323 - 12424243-12424776                                         29   2.3  

>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
          Length = 371

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +2

Query: 464 TLNTMQALCFPLGSSVALLIMFFFFDSM 547
           TL+  QAL  PL SS +LL+MF+ F S+
Sbjct: 52  TLDRSQALMIPLASSCSLLLMFYLFSSV 79


>05_03_0323 - 12424243-12424776
          Length = 177

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 559 DQGLHGVKEEEHDQQRYGRAQGEAQRLHRVQCLHVV 452
           D  +HG   +E D +   R Q EAQ+ H +   H +
Sbjct: 90  DDSVHGSLHDETDGEATAREQREAQQRHNIAAAHAM 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,028
Number of Sequences: 37544
Number of extensions: 272929
Number of successful extensions: 674
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)