Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g12
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)                 72   3e-13
SB_20245| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.8  
SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_43645| Best HMM Match : MpPF26 (HMM E-Value=3)                      28   5.5  
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)    27   9.7  
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)                  27   9.7  
SB_51160| Best HMM Match : MIP (HMM E-Value=0.13)                      27   9.7  

>SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)
          Length = 839

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 37/94 (39%), Positives = 59/94 (62%)
 Frame = +2

Query: 269 YKWAYSIMDSSKVSACLISMLLIVYGSFRSLNMXXXXXXXXXXXXXXSLLGGKPATPSSS 448
           ++W Y ++DSS++   +IS+LLI+YGSFR+L +              S  GG P   +  
Sbjct: 558 HQWFYLLLDSSRILTIVISILLIIYGSFRALGIDSACKNQADADDD-SGQGGTPL--NGF 614

Query: 449 NNNVQTLNTMQALCFPLGSSVALLIMFFFFDSMQ 550
            +  QT+N+ QA+  P+G+S +LL+MFFFFD++Q
Sbjct: 615 LDGFQTINSAQAVFLPVGASFSLLVMFFFFDTLQ 648


>SB_20245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +2

Query: 422 GKPATPSSSN-NNVQTLNTMQALCFPLGSSVALLIMFFFFDSMQ 550
           G+  TP +   +  QT+N+ QA+  P+G+S +LL+MFFFFD++Q
Sbjct: 25  GQGGTPLNGFLDGFQTINSAQAVFLPVGASFSLLVMFFFFDTLQ 68


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 26.2 bits (55), Expect(2) = 4.8
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -3

Query: 202 IGYQLRLGNS----LLYTASVLLTKDPYFHA*ITRTYTNTDFDTLK*LIFTLIF 53
           I Y   LGN      + T  V+++K+P FH    R +   D   L  L+  ++F
Sbjct: 123 IRYTTELGNPGQGYTILTGDVVVSKNPCFHPGDMRKFNAVDIPALYHLVDCIVF 176



 Score = 20.6 bits (41), Expect(2) = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 223 LAIFRSRIGYQLR 185
           LAI+RSR+G  LR
Sbjct: 80  LAIYRSRLGDLLR 92


>SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 370 EGGSRKS*ERKRGVTARRETRNTFELQQQRADIEHDASAVLPP 498
           +   R++ +   G  + ++T N+F+ QQ+R  IE  ++ +  P
Sbjct: 20  QNNKRQANQIPNGAPSHKKTNNSFDSQQERPSIESTSTTLSSP 62


>SB_43645| Best HMM Match : MpPF26 (HMM E-Value=3)
          Length = 168

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 271 VLLIFHVSSHLRHFVHLAIFRSRIGYQLRLGNSLLYTASVLLTKDPYFH 125
           ++L   V   ++ F+H   +   IGY   LGN+L  TA VL+ K   F+
Sbjct: 100 MMLFSSVRDAVKDFLH-PTYGDIIGYCFLLGNTLCMTAYVLIQKKFIFN 147


>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
          Length = 618

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -3

Query: 340 DYEQHRDQTG*HLGGVHD*VCPFVLLIFHVSSHLRHFVHLAIFRSRIGYQLR 185
           D+    +  G    G+H  VC   +L+  +  H+R+   L    +++GY  +
Sbjct: 6   DFRARLNSQGVMATGIHSDVCQHAMLLPVLVHHIRYHTCLRTLDAKLGYTFK 57


>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
          Length = 510

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 562 GDQGLHGVKEEEHDQQRYGRAQG 494
           GDQG+ GVK+E+ D+   G AQG
Sbjct: 359 GDQGMQGVKDEKGDKGDQG-AQG 380


>SB_51160| Best HMM Match : MIP (HMM E-Value=0.13)
          Length = 294

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 242 VGANMEYQEYKWAYSIMDSSKVSACLISMLLIVYGSFRS 358
           V  NM  + YK+A  ++ S + SAC+    L+V G F S
Sbjct: 24  VKTNMLPRHYKYASELISSFQFSACIFE--LVVIGRFYS 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,662,478
Number of Sequences: 59808
Number of extensions: 302673
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)