Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g12
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical
           protein B0511.7 protein.
          Length = 302

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 262 SRVQMGILNHGLLQGVSLSDLDAAH 336
           SRV   +L HGLLQ  +L D+D++H
Sbjct: 64  SRVHALLLYHGLLQRFALIDMDSSH 88


>Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical
           protein F34D10.2 protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 627 TYWHSGVSRNASAAHAIIAVQMATRVCME 541
           T W + V  N++ A  +I+++M T++C++
Sbjct: 218 TMWFTAVGLNSAMADKLISIEMYTQICVD 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,181,542
Number of Sequences: 27780
Number of extensions: 219700
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)