Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g12
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 633  PATYWHSGVSRNASAAHAIIAVQMAT 556
            PAT++H  V+ + +A  A+   + AT
Sbjct: 1526 PATWYHLRVTAHNNAGFAVAEYEFAT 1551


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 565 DGDQGLHGVKEEEHDQQRYGRAQGEAQR 482
           DG+       +EE++++  GR Q EA++
Sbjct: 273 DGEGADDRDDDEENEEEEDGRGQSEAEK 300



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 571 SADGDQGLHGVKEEEHDQQRYGRAQGEAQ 485
           S +GDQ     ++  H Q  + +AQ +AQ
Sbjct: 801 SVNGDQSQPPHQQLHHHQSTHPQAQAQAQ 829


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 410 TPLFLSQLFREPPSPCSVN 354
           TP FLS+    PP+P S N
Sbjct: 291 TPNFLSEAKIFPPTPGSFN 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,069
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)