Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11g12
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 32 0.28
At1g45010.1 68414.m05159 expressed protein 32 0.28
At3g17400.1 68416.m02223 F-box family protein contains Pfam prof... 31 0.85
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 29 2.6
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 29 2.6
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 29 2.6
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 28 4.5
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 28 4.5
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 28 4.5
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 464 TLNTMQALCFPLGSSVALLIMFFFFDSM 547
TL++ QAL P+ SS +LL+MF+ F S+
Sbjct: 52 TLDSSQALMIPVMSSCSLLLMFYLFSSV 79
>At1g45010.1 68414.m05159 expressed protein
Length = 231
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -3
Query: 295 VHD*VCPFVLLIFHVSSHLRHFVHLAIFRSRIGYQLRLGNSLLYTASVLLTKDPYFH 125
++D +C +F + + + HFV + F + + YQ + G+ ++ T V P+FH
Sbjct: 88 IYDLICCHFDQVFSIDNAVHHFVSILGFIAGLAYQ-KSGSEIVATLWVAEISSPFFH 143
>At3g17400.1 68416.m02223 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 185
Score = 30.7 bits (66), Expect = 0.85
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = -3
Query: 241 LRHFVHLAIFRSRIGYQLRLGNSLLYTASVLLTKDPYFHA*ITRTYTNTDFDTL 80
LRHF H ++ IGYQ+R GN T+ LLT P T+T T D L
Sbjct: 139 LRHFPHWYMYA--IGYQMRRGNRDAKTSRWLLTCRP-----TTKTITKNTIDHL 185
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 307 VSLSDLDAAHSLR*FPFTEHGEGGSRKS*ERKRGVTARRETRNTFELQQQRADIEHDAS 483
+ +SD ++ +L+ F + G GG+ S E+ R + R F QQ+ ++H +
Sbjct: 18 IEISDSESLENLKSSDFYQLGGGGALNSSEKPRKIDFWRSGLMGFAKMQQQQQLQHSVA 76
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 307 VSLSDLDAAHSLR*FPFTEHGEGGSRKS*ERKRGVTARRETRNTFELQQQRADIEHDAS 483
+ +SD ++ +L+ F + G GG+ S E+ R + R F QQ+ ++H +
Sbjct: 41 IEISDSESLENLKSSDFYQLGGGGALNSSEKPRKIDFWRSGLMGFAKMQQQQQLQHSVA 99
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 307 VSLSDLDAAHSLR*FPFTEHGEGGSRKS*ERKRGVTARRETRNTFELQQQRADIEHDAS 483
+ +SD ++ +L+ F + G GG+ S E+ R + R F QQ+ ++H +
Sbjct: 18 IEISDSESLENLKSSDFYQLGGGGALNSSEKPRKIDFWRSGLMGFAKMQQQQQLQHSVA 76
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 197 LSVTSWELVAVYRLSFANKRPVFP 126
LS+TSW +AVY +S+ FP
Sbjct: 942 LSITSWSRLAVYEMSYFESLKEFP 965
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 197 LSVTSWELVAVYRLSFANKRPVFP 126
LS+TSW +AVY +S+ FP
Sbjct: 942 LSITSWSRLAVYEMSYFESLKEFP 965
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 197 LSVTSWELVAVYRLSFANKRPVFP 126
LS+TSW +AVY +S+ FP
Sbjct: 942 LSITSWSRLAVYEMSYFESLKEFP 965
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,506,696
Number of Sequences: 28952
Number of extensions: 203840
Number of successful extensions: 502
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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