Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11g11
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 47 3e-06
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 31 0.16
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.27
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 1.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 1.9
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.4
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 5.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 5.9
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 7.8
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/87 (32%), Positives = 42/87 (48%)
Frame = +2
Query: 374 TENLNESDIAIVQTNEQFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVA 553
TE ++ + P+T + I P+ +T C H YE++ IL+L+ CPV
Sbjct: 160 TEEQEADEVMVYSATFDNRCPLTLQPIVHPILSTACNHFYEKDAILSLL--NPTCVCPVV 217
Query: 554 GCANPESIQENHLLEDEELRFRLSLSQ 634
GC +Q + L EDE L RL +Q
Sbjct: 218 GC--EARLQRSLLKEDEILERRLRRAQ 242
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 31.1 bits (67), Expect = 0.16
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +2
Query: 314 MQELKTRYESGLQSVSSSGLTENLNESDIAIVQTNEQFLDPITKKHISDPVKNTMCGHV- 490
+ ++K+R + + +N ++DI T+ P++ IS PV++ C H+
Sbjct: 267 VDQIKSRKAESKEKIIERIKNDN-QDADIIATSTDISLKCPLSFSRISLPVRSVFCKHIQ 325
Query: 491 -YERETILNLIRRKHRIRCPVAGCANPESIQENHLLED 601
++ L + ++ CPV CA+ IQ + L+ D
Sbjct: 326 CFDASAFLEMNKQTPSWMCPV--CAS--HIQFSDLIID 359
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 30.3 bits (65), Expect = 0.27
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 SNINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSVSS---SGLTENLNESD 397
SN+ TLQ R+ L L + + R + KT Y G + S + +N
Sbjct: 338 SNLITLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRNVLSNMLDNERREK 397
Query: 398 IAIVQTNEQFLDPITKKHISDPVKNT 475
A++Q E ++KK + P KNT
Sbjct: 398 EALLQELESLRVQLSKK-VPMPAKNT 422
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 371 LTENLNESDIAIVQTNEQFLDPITKKHISDPVKNTMCGHVYERETILNL 517
L E ++ S+++++ NE++ I +KH S P +YE L L
Sbjct: 125 LLEAMDNSNVSLLPENEKYRAVILRKHTSQP-NEPFSPEIYEAVHALTL 172
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 306 WLLGLILFCERVFRPSSNL 250
WL GL FC RVFR S+L
Sbjct: 733 WLQGLASFCGRVFRRYSSL 751
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.4
Identities = 30/106 (28%), Positives = 43/106 (40%)
Frame = +2
Query: 230 NINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDIAIV 409
N N E+ E L S + +S K+R S ++ T+ L E+ I
Sbjct: 21 NNNLDDEKMEVLLIPQSNSTTFASSDATQMYKKSRISSNSENKKQIPDTKTLLETFQKIK 80
Query: 410 QTNEQFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCP 547
+T E PI + + P T CGH Y E +LN + K CP
Sbjct: 81 KTLEC---PICTEALQRPF-TTHCGHTYCYECLLNWL--KESKSCP 120
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 275 LSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDI 400
+S+N+ N +S + Q+ S LQS+S++ L EN+ + I
Sbjct: 406 ISRNQSNLSSFQQQQQF-----SALQSISNNALNENIEQPPI 442
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 218 TNISNINTLQERFEDGLKT 274
T +SN+N ++E +DGLKT
Sbjct: 175 TILSNMNAVEETVKDGLKT 193
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 309 LWLLGLILFCERVFRPSSNLSWSVFMFDMLV 217
+W LG+ LFC R N S +FD +V
Sbjct: 336 VWALGVTLFCLLFGRCPFNASMEYELFDKIV 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,180
Number of Sequences: 5004
Number of extensions: 53527
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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