Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11g10
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 29 0.49
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 27 2.0
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 27 2.0
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 3.4
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 27 3.4
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.0
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 7.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 7.9
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce... 25 7.9
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 25 7.9
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.49
Identities = 30/94 (31%), Positives = 42/94 (44%)
Frame = +3
Query: 249 NQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLFVAAAFSFRYESCLRPFPPAFMKSGIKD 428
N K +TL LRL EK+ D W LF S E C R FP + +GI
Sbjct: 182 NTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHIS-ALELCTRMFPGIPIMAGIFA 240
Query: 429 MDELLSVITDVPALDLVLQQLDNLEALPNISDII 530
++ + P L+L L+++ NL IS I+
Sbjct: 241 DEKCF----EKPMLNL-LERILNLLQCKYISSIL 269
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/74 (17%), Positives = 37/74 (50%)
Frame = +3
Query: 474 LVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEQILAMANTMTTPSKPQH 653
+++ +++ A+ I D L+F+V ++ + T+K ++ NT+ P+ +
Sbjct: 61 IIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKK 120
Query: 654 IFQVISSNKSTVEL 695
F +S++ +++
Sbjct: 121 AFVKLSADADALDV 134
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 450 ITDVPALD---LVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEQILAMA 620
+ P LD +++ +++ A+ I D L+F+V ++ + T+K ++
Sbjct: 50 VAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKI 109
Query: 621 NTMTTPSKPQHIFQVISSNKSTVEL 695
NT+ P+ + F +S++ +++
Sbjct: 110 NTLIRPNGTKKAFVKLSADADALDV 134
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 232 SDTEAILQLVPVSDNTSCSL 173
S+T AI+Q+VP S+NT S+
Sbjct: 277 SETNAIIQVVPFSENTLLSV 296
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 348 VAAAFSFRYESCLRPFPPAF---MKSGIKDMDELLSVITDVPALDLVLQQLDNLEALPNI 518
V F + LR P+F M KD+D LSV TD +V L+ ++ I
Sbjct: 462 VGRTFEESLQKALRQVDPSFLGFMAMPFKDLDNALSVPTDRRFFAVVEAMLNQGYSIDKI 521
Query: 519 SDIIDLLFYVLVRL 560
D+ + + L +L
Sbjct: 522 HDLTKIDKWFLSKL 535
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 231 ETMSDINQTKLDTLEKKAVHLRLVLEK 311
E DI++TKLDTL + L+LEK
Sbjct: 535 EFTDDIHRTKLDTLLTQVRPKELILEK 561
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 240 TLSLIPRLYYNWYPFLITPRALSPFYE*TNIAF 142
T +++ + YN+YPF++ P A F + T+ F
Sbjct: 807 TKAMVEKGVYNYYPFIV-PNANHEFSDPTDYTF 838
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 328 SAALKSFSKTSLR*TAFFSKVSNLV*LISDIVSDTEAILQL-VPVSDN 188
S ALK + T+L A K+S V + + S T+AI L +P++D+
Sbjct: 1720 SVALKELNATNLLQKAALHKISRFVNALCNEESLTDAICNLPLPLADS 1767
>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 97
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 192 SETGTNCNIASVSETMSDINQTKLDTLEKKAVHLRLVLEKD 314
+E NC + +S T D + LD + + H+R ++ D
Sbjct: 33 AEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPD 73
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 423 KDMDELLSVITDVPALDLVLQQLDNLEALPN 515
K +ELL I PA+ LQQ D E N
Sbjct: 295 KKNEELLRTIDKAPAISKKLQQKDKAEKFSN 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,025
Number of Sequences: 5004
Number of extensions: 56032
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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